a statistical surrogate-based bayesian approach to

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A Statistical Surrogate-Based Bayesian Approach to Calculate Brain Injury Criteria Sandeep Madireddy 1,2 and Kumar Vemaganti 2 1 Mathematics and Computer Science Division, Argonne National Laboratory 2 Department of Mechanical and Materials Engineering, University of Cincinnati A Statistical Surrogate-Based Bayesian Approach to Calculate Brain Injury Criteria Sandeep Madireddy 1,2 and Kumar Vemaganti 2 1 Mathematics and Computer Science Division, Argonne National Laboratory 2 Department of Mechanical and Materials Engineering, University of Cincinnati Introduction/Motivation TRAUMATIC BRAIN INJURY Traumatic brain injury (TBI) is one of the major cause of death and disability in U.S.A. Approximately, 1.7 million people suffer from TBI each year with about 50000 deaths in U.S. Moderate and severe TBI causes focal injuries like skull fracture, hemorrage and can be detected by X-ray CT and MRI. Mild TBI causes diffused injuries and cannot be detected using X-ray CT and MRI. Mild TBI diagnosis is primarily based on neurocognitive assessments. Computational models of the human head are extensively used to study mild TBI. Severe 3% Moderate 22% Mild 75% Traumatic Brain Injury SOFT TISSUE CONSTITUTIVE MODELS Large variability in the observed experimental response. The estimated constitutive model parameters - show a large variability. Constitutive models are themselves phenomenological. Brain tissue constitutive models are incorporated into finite element mod- els used to study TBI. Calibrated using simple uniaxial/ shear experiments. Strain (%) -10 0 10 20 30 40 50 60 Stress (kPa) 0 2 4 6 8 10 12 30/s 5/s 0.5/s Time (Sec) 10 -2 10 0 10 2 10 4 Relaxation Modulus G(t) (Pa) 0 200 400 600 800 1000 P1 P2 P3 P4 B1 B2 B3 N1 N2 N3 N4 N5 Constitutive Modeling Brain tissue is assumed to be an isotropic and nonlinear visco-hyperelastic. The long-term viscoelasticity, the short-term viscoelasticity, and hyperelasticity contributions to the mechanical response of the brain tissue are modeled separately (Pioletti et al.) σ (t)= σ e (C(t)) + σ v ( ˙ C(t), C(t)) + F(t) Z δ G (t - s, s, C(s)) ds F(t) T σ e (C(t)) = 2F(t) Ψ e C F(t) T Ψ e = B 1 (exp(B 2 (I 1 - 3)) - 1) σ v ( ˙ C(t), C(t)) = 2F(t) Ψ v ˙ C F(t) T Ψ v = η J 2 (I 1 - 3) σ l v (C(t),t - s)= Z δ ˙ G (t - s) σ e (C(t)) G (s)= G + 3 X i=1 G i e (-s/τ i ) Bayesian Framework for Calibration f (θ|m)= d + η f (θ|m) is the model form. d D is the hypothetical true data. η is the noise. Using Bayes Theorem: PRIOR PDF OF THE PARAMETERS The interval [a, b] is chosen based on prior knowledge and a simulation study. NOISE: ADDITIVE GAUSSIAN Likelihood : Gaussian (0) P (d|θ, m, I )= n Y i=1 1 2πσ i 2 exp - (f (θ|m) - d i ) 2 2σ i 2 SAMPLING ALGORITHM Used to obtain the pos- terior and evidence. NESTED MONTE CARLO SAM- PLING based algorithm MULTI- NEST. NESTED MONTE CARLO SAMPLING Goal: Calculate P (d|m, I ) = R θ P (d|θ, m, I )P (θ|m, I )dθ Prior distribution: π(Θ) Differential element of prior “mass”: dX = π(Θ)dΘ Prior volume : X (λ)= R {θ:L(Θ)} π(Θ)dΘ Evidence : →Z = R 0 X (λ)dλ →L(X (λ)) = λ →Z = R 1 0 L(X )dX L 1 L 2 L 3 L 4 L 5 Calibration process - Stochastic Nonlinear Visco-Hyperelastic Model Cylindrical specimens d=22mm, l=14mm Relaxation test in compression: Strain rate of 50 s -1 Max nominal strain of 20,30,40,50,60,70 % G 1 τ 1 (s) G 2 τ 2 (s) G 3 τ 3 (s) 4.168 1.512 E-02 0.828 2.833 E-01 0.606 1.732 Uniaxial unconfined compression test Strain rate of 1 s -1 , 10 s -1 ,50 s -1 Compare the response constitutive model with MLE of the parameters to the experimental data B 1 (kPa) B 2 η (kPas) 0.675 0.431 0.793 E-02 Distribution of the parameters B 1 (kPa) ,B 2 (kPas) Obtained using Bayesian calibration Deterministic Computational Model Geometry and Constitutive Model Blood Vessels Flax PAC – CSF Layer Cerebrum Cerebellum Brainstem Foramen Magnum Ventricles Tentorum SIMon FE head model 45875 elements Cerebrum, cerebellum, and brain stem - nonlinear visco- hyperelastic UMAT in LS-Dyna Used MLE values of parameters Loading and Boundary Conditions A free boundary condition - simulate impact Time duration of the impact - too short for the neck to influ- ence kinematics of the head re- sponse Choose only angular velocity in sagittal plane Impact duration of 0.115 sec Each simulation takes 60 min- utes on 60 processors Statistical Surrogate Model for the Computational Model SAMPLING Deterministic Computational Model Finite Element Head model Injury Criterion Distribution Surrogate Model Injury Criterion = !(#) Training & Validation Stochastic Nonlinear ViscoBhyperelastic Constitutive model A finite element simulation for every sample (22000) - not feasible computationally 104 samples - parameter space - Latin hypercube sam- pling - LS-OPT 90 - training , 14 - validating the surrogate model A finite element simulation run for each of the 104 sam- ples - Injury criterion calculated GAUSSIAN PROCESS MODEL Stationary spatial process is represented by Y(θ )= μ(θ )+ w(θ )+ (θ ) θ : parameter space, Y(θ ): injury criterion μ(θ )= X T (θ )β , w(θ )= N ( 0, C (φ2 ) ) (θ )= N ( 02 I ) Obtain the posterior probability P ({β,φ,σ 2 }|Y) References 1. Feroz, F. et.al, Multinest: an efficient and robust bayesian inference tool for cosmology and particle physics, Monthly Notices of the Royal Astronomical Society, 398(4):1601?1614, 2009. 2. S. Madireddy, B. Sista, K. Vemaganti,“A Bayesian approach to selecting hyperelastic constitutive models of soft tissue”, Computer Methods in Applied Mechanics and Engineering, 291(2015), 102-122. 3. S. Madireddy, B. Sista, K. Vemaganti,“Bayesian calibration of hyperelastic constitutive models of soft tissue”, Journal of Mechanical Behavior of Biomedical Materials., 59 (2016) 108-127. 4. DP. Pioletti and LR. Rakotomanana,“Non-linear viscoelastic laws for soft biological tissues”, European Journal of Mechanics A-Solids, 19(2000), 749?759. Brain Injury Criteria Distribution Maximum principal strain is selected as the injury criterion. Uncertainty in the material parameters is propagated to the injury criterion. Considering the injury threshold to be 0.33 - The probability that the mild TBI injury occurs for this loading is 85% Summary & Conclusions Bayesian framework for calibration takes the experimental uncertainty into consideration to obtain a distribution of parameters. Experimental data used covers the typical strain rates experienced during impact loads. Developed a stochastic nonlinear visco-hyperelastic model that describes the experimental data and its uncertainty. A finite element computational model (SIMon) is used to simulate the injury load in vehicle crash test. The surrogate model based approach enables us to calculate the probability that an injury tolerance is reached for a given impact loading. This probabilistic method can be used to further simulate injuries and calculate various injury criteria with higher fidelity.

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Page 1: A Statistical Surrogate-Based Bayesian Approach to

LATEX TikZposter

A Statistical Surrogate-Based Bayesian Approach to Calculate Brain Injury Criteria

Sandeep Madireddy1,2 and Kumar Vemaganti2

1Mathematics and Computer Science Division, Argonne National Laboratory2Department of Mechanical and Materials Engineering, University of Cincinnati

A Statistical Surrogate-Based Bayesian Approach to Calculate Brain Injury Criteria

Sandeep Madireddy1,2 and Kumar Vemaganti2

1Mathematics and Computer Science Division, Argonne National Laboratory2Department of Mechanical and Materials Engineering, University of Cincinnati

Introduction/Motivation

TRAUMATIC BRAIN INJURY

• Traumatic brain injury (TBI) is one of the major cause of death and disability in U.S.A.

• Approximately, 1.7 million people suffer from TBI each year with about 50000 deaths in U.S.

• Moderate and severe TBI causes focal injuries like skull fracture, hemorrage and can be detectedby X-ray CT and MRI.

• Mild TBI causes diffused injuries and cannot be detected using X-ray CT and MRI.

• Mild TBI diagnosis is primarily based on neurocognitive assessments.

• Computational models of the human head are extensively used to study mild TBI.

Severe3%

Moderate22%

Mild75%

TraumaticBrainInjury

SOFT TISSUE CONSTITUTIVE MODELS

• Large variability in the observed experimental response.

• The estimated constitutive model parameters - show a large variability.

• Constitutive models are themselves phenomenological.

• Brain tissue constitutive models are incorporated into finite element mod-els used to study TBI.

• Calibrated using simple uniaxial/ shear experiments.

Strain (%) -10 0 10 20 30 40 50 60

Stre

ss (k

Pa)

0

2

4

6

8

10

1230/s5/s0.5/s

Time (Sec)10-2 100 102 104

Rel

axat

ion

Mod

ulus

G(t)

(Pa)

0

200

400

600

800

1000P1P2P3P4B1B2B3N1N2N3N4N5

Constitutive Modeling

• Brain tissue is assumed to be an isotropic and nonlinear visco-hyperelastic.

• The long-term viscoelasticity, the short-term viscoelasticity, and hyperelasticity contributions to the mechanical response of thebrain tissue are modeled separately (Pioletti et al.)

σ(t) = σe(C(t)) + σv(C(t),C(t)) + F(t)

∫ ∞δG(t− s, s,C(s)) dsF(t)T

σe(C(t)) = 2F(t)∂Ψe∂C

F(t)T

Ψe = B1(exp(B2(I1 − 3))− 1)

σv(C(t),C(t)) = 2F(t)∂Ψv

∂CF(t)T

Ψv = ηJ2(I1 − 3)

σlv(C(t), t− s) =

∫ ∞δG(t− s)σe(C(t))

G(s) =

G∞ +

3∑i=1

Gie(−s/τi)

Bayesian Framework for Calibration

f(θ|m) = d+ η

• f(θ|m) is the model form.

• d ∈ D is the hypothetical true data.

• η is the noise.

Using Bayes Theorem:

PRIOR PDF OF THE

PARAMETERS

The interval [a, b] is chosenbased on prior knowledge anda simulation study.

NOISE: ADDITIVE GAUSSIAN

Likelihood : Gaussian (0, σ)

P (d|θ,m, I) =n∏

i=1

1√2πσi2

exp

[−(f(θ|m)− di)2

2σi2

]

SAMPLING ALGORITHM

Used to obtain the pos-terior and evidence.

NESTED MONTE CARLO SAM-PLING based algorithm MULTI-NEST.

NESTED MONTE CARLO

SAMPLING

Goal: Calculate P (d|m, I) =∫θP (d|θ,m, I)P (θ|m, I) dθ

Prior distribution: π(Θ)

Differential element ofprior “mass”:→dX = π(Θ)dΘ

Prior volume :→X(λ) =

∫{θ:L(Θ)>λ} π(Θ)dΘ

Evidence :→Z =

∫∞0 X(λ)dλ

→L(X(λ)) = λ

→Z =∫ 1

0 L(X)dX

L1

L2

L3

L4

L5

Calibration process - Stochastic Nonlinear Visco-Hyperelastic Model

• Cylindrical specimens d=22mm, l=14mm

• Relaxation test in compression: Strain rate of 50 s−1

• Max nominal strain of 20,30,40,50,60,70 %

G1 τ1(s) G2 τ2(s) G3 τ3(s)4.168 1.512 E-02 0.828 2.833 E-01 0.606 1.732

• Uniaxial unconfined compression test

• Strain rate of 1 s−1, 10 s−1,50 s−1

• Compare the response constitutive model with MLEof the parameters to the experimental data

B1(kPa) B2 η(kPa s)0.675 0.431 0.793 E-02

• Distribution of the parametersB1(kPa) , B2 , η(kPa s)

• Obtained using Bayesian calibration

Deterministic Computational Model

Geometry and Constitutive Model

Blood%VesselsFlax

PAC%– CSF%Layer

CerebrumCerebellum

Brainstem

Foramen%Magnum

Ventricles

Tentorum

• SIMon FE head model

• 45875 elements

• Cerebrum, cerebellum, andbrain stem - nonlinear visco-hyperelastic

• UMAT in LS-Dyna

• Used MLE values of parameters

Loading and Boundary Conditions

• A free boundary condition -simulate impact

• Time duration of the impact -too short for the neck to influ-ence kinematics of the head re-sponse

• Choose only angular velocity insagittal plane

• Impact duration of 0.115 sec

• Each simulation takes 60 min-utes on 60 processors

Statistical Surrogate Model for the Computational Model

SAMPLING

Deterministic*Computational*Model

Finite*Element*Head*model

Injury*Criterion*Distribution

Surrogate*ModelInjury*Criterion*=*!(#)

Training*&Validation

Stochastic*NonlinearViscoBhyperelastic*Constitutive*model

• A finite element simulation for every sample (22000) -not feasible computationally

• 104 samples - parameter space - Latin hypercube sam-pling - LS-OPT

• 90 - training , 14 - validating the surrogate model

• A finite element simulation run for each of the 104 sam-ples - Injury criterion calculated

GAUSSIAN PROCESS MODEL

• Stationary spatial process is represented by

Y(θ) = µ(θ) + w(θ) + ε(θ)

• θ: parameter space, Y(θ): injury criterion

• µ(θ) = XT (θ)β, w(θ) = N(0, C(φ, σ2)

)• ε(θ) = N

(0, τ2I

)• Obtain the posterior probability P ({βββ,φφφ, σ2}|Y)

References

1. Feroz, F. et.al, Multinest: an efficient and robust bayesian inference tool for cosmology and particle physics, Monthly Notices of the Royal Astronomical Society, 398(4):1601?1614, 2009.

2. S. Madireddy, B. Sista, K. Vemaganti, “A Bayesian approach to selecting hyperelastic constitutive models of soft tissue”, Computer Methods in Applied Mechanics and Engineering, 291(2015), 102-122.

3. S. Madireddy, B. Sista, K. Vemaganti, “Bayesian calibration of hyperelastic constitutive models of soft tissue”, Journal of Mechanical Behavior of Biomedical Materials., 59 (2016) 108-127.

4. DP. Pioletti and LR. Rakotomanana, “Non-linear viscoelastic laws for soft biological tissues”, European Journal of Mechanics A-Solids, 19(2000), 749?759.

Brain Injury Criteria Distribution

• Maximum principal strain is selected as the injury criterion.

• Uncertainty in the material parameters is propagated to the injury criterion.

• Considering the injury threshold to be 0.33 - The probability that the mild TBI injury occurs for thisloading is 85%

Summary & Conclusions

• Bayesian framework for calibration takes the experimental uncertainty into consideration to obtain adistribution of parameters.

• Experimental data used covers the typical strain rates experienced during impact loads.

• Developed a stochastic nonlinear visco-hyperelastic model that describes the experimental data andits uncertainty.

• A finite element computational model (SIMon) is used to simulate the injury load in vehicle crash test.

• The surrogate model based approach enables us to calculate the probability that an injury toleranceis reached for a given impact loading.

• This probabilistic method can be used to further simulate injuries and calculate various injury criteriawith higher fidelity.