the plant of the day bristlecone pine - two species pinus aristata (co, nm, az), pinus longaeva (ut,...

The plant of the dayBristlecone pine - Two species Pinus aristata (CO, NM, AZ), Pinus longaeva (UT, NV, CA)

Thought to reach an age far greater than any other single living organism (~5000yrs)

Used by dendrochronologists to determine past climatic events(back to 7K BC)

Inhabits harsh environments (arid, alkaline soil) free of competition (short growing season)

Slow growingDense wood (stops infection)Long lived needles

Non-random mating

Assortative mating – mating with individuals that are similar or dissimilar for a given trait.

Inbreeding – mating with a close relative.

Non-random mating, genetic drift, and population structure

Positive Assortative Mating

If the phenotype is under genetic control, Positive assortative mating increases homozygosity and decreases heterozygosity for the genes affecting the trait.

PositiveAssortative Mating

in the genus Burmeistera, bats are more efficient at moving pollen between wide flowers, whereas hummingbirds excel at pollen transfer between narrow flowers.

Negative Assortative Mating

If the phenotype is under genetic control, Negative assortative mating increases heterozygosity and decreases homozygosity for the genes affecting the trait.

Negative Assortative Mating

Plant self-incompatibility systems lead to negative

assortative mating.

Examples: SunflowersCocoa treeBlue bells

Brassica rapa (field mustard)

Inbreeding: mating with a close relative

Biparental: two different individuals are involved

Inbreeding

Intragametophytic selfing: mating between gametes produced from the same haploid individual

-100% homozygosity in one generation!

- some ferns and mosses

Extreme inbreeding

The effects of inbreeding on genotype and allele frequencies

Fewer heterozygotes and more homozygotes

No change in allele frequency

Inbreeding

Inbreeding does NOT change allele frequency by itself

It does increase homozygosity

Inbreeding coefficient (F):measures the extent to which populations depart from the expectation of 2pq (remember p² + 2pq + q² = 1)

He = Expected heterozygosity, HW (2pq)Ho = Observed heterozygosity

F = (He-Ho)/He

Evolutionary Consequences of Inbreeding

In large, random mating populations, most individuals will not suffer from deleterious effects of recessive deleterious alleles

Under inbreeding, increased homozygosity for these recessive deleterious alleles results in reduced fitness

Genetic drift

Definition: Changes in allele frequency due to random sampling.

One of the requirements for the maintenance of stable allelefrequencies in populations is a very large population size.

Genetic drift is the consequence of finite population size.

Genetic drift

Alleles that do not affectfitness fluctuate randomly in frequency, which eventually results in the loss of alleles from populations. One allelebecomes fixed.

Genetic drift

Different populations will lose different alleles. The probability that a particular allele will be fixed in a population in the future equals the frequency of the allele in the population.

If a largenumber ofpopulations isconsidered,each drifting,the totalheterozygosityoverall willdecrease.

Genetic drift

Starting with a population size of N with two alleles in equal frequencies p and q, the likely magnitude of divergence from the initial frequencies increases with time.

Genetic drift

After 2N generations, allallele frequencies are equally likely.

The average time to fixation of one of the alleles is 4N generations.

Effective population size

Effective population size - number of individuals in thepopulation that successfully pass genes to the next generation.-usually smaller than the actual population (census) size-drift will occur more quickly in smaller populations

Effective population size and Drift

Effective population size

The effective population size (Ne) is affected by biologicalparameters other than the number of breeding individuals in the population. These include:•Variation in offspring number among individuals•A sex ratio other than 1:1•Natural selection•Inbreeding (reduces the number of different copies of a gene passed to the next generation)•Fluctuations in population size

Founder effects

When a small number of individuals from a source population establish a new population genetic variation can be lost. The loss of genetic variation due to such an extreme bottleneck is called the founder effect.

Simulations of founder effectssuggest that a small numberfounders and a small populationgrowth rate (r) result in greater lossof genetic diversity.

Eventually mutation will restoregenetic variation in a foundingpopulation.

Effects of Drift

• Within populations– Changes allele frequencies– Reduces variance– Does not cause deviations from HW expectations

• Among populations (if there are many)– Does NOT change allele frequencies– Does NOT degrade diversity– Causes a deficiency of heterozygotes compared

to Hardy-Weinberg expectations (if the existence of populations is ignored), like inbreeding.

Genetic Drift: summary

Effects of Drift

• Erodes genetic variation within populations

• Causes population differentiation

• Strength is dependant on population size

• The demographic history of populations effects patterns of genetic variation

• Can oppose selection- conservation implications

• Provides a “neutral” model for evolutionary change and most molecular changes are effectively neutral

Genetic drift: why is it important?

How do we measure population genetic structure?

Population structure

Sewall Wright

Fixation index is a measure of genetic differentiation among populations

Compare heterozygosity at different hierarchical levels

FST=(HT-HS)/HT

HT: The overall expected HW heterozygosity for the total area

HS: The average expected HW heterozygosity among organisms within populations

Wright’s fixation index

Linanthus parryae population structure

What is the genetic divergence among sub populations FST?

What could be causing the divergence in flower colour among the sub populations?