analysis of metagenomes
DESCRIPTION
Max Planck Institute for Marine Microbiology, Bremen, Germany, August 24-25, 2007TRANSCRIPT
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Analysis of metagenomes
Lars Juhl Jensen
EMBL Heidelberg
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the challenge
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the sheer amount of data
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what can we do with it?
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function prediction
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sequence homology
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gene neighborhood
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exploitation
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bioremediation
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statistical analyses
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comparing environments
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UndergroundMine Biofilm
SurfaceSea Water
Farm Soil Deep SeaWhale Skeleton
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GC content
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effective genome size
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phylogenetic composition
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functional fingerprints
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visualization
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metabolic reactions
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saltmats are like onions …
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… they have layers
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QuickTime™ and a decompressor
are needed to see this picture.
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Acknowledgments
EMBLJeroen Raes
Christian von MeringEoghan Harrington
Konrad FörstnerAmoolya SinghTakuji YamadaIvica Letunic
Peer Bork
JGISusannah TringePhil Hugenholtz
Eddy Rubin