Promoting the scientific health output among professionals and providing citizens with quality health information

Andalusian Health Repository

Toro-Sánchez-Blanco, Pilar, Matamoros-Casas, Teresa, Juan-Quilis, VerónicaBiblioteca Virtual del Sistema Sanitario Público de Andalucía. Consejería de

Salud de la Junta de Andalucía, Seville, Spain

Index

• Andalusian Public Health System

• Andalusian Health repository • Special features • Customization of DSpace

• Metadata Dublin Core Scheme • Advanced Search • Integration MeSH Thesaurus • Submission Form

• Batch Ingest

Andalusian Public Health System

Health System:

- Health Regional Government and other management centres

- 45 hospitals- 1520 primary healthcare centres- More than 20 research and teaching centres- 102.500 professionals

Andalusia:

- More than 8 million inhabitants- 87,268 km2 (17.2% of Spain)- 8 provinces

Produced in electronic format

Evaluated by:

editorial editorial editorial committee or

aa peer peer reviewreviewreview systemsystemScientific journals

Health System entities

Andalusian Health System Scientific Output

Monographs

Journals

Articles

Materials for patients and citizens

Plans and health programs

Guides and healthcare protocols

Research projects…

Medical care, research, health promotion and administrative activities

http://my.spill.com/profiles/blogs/947994:BlogPost:322342

Andalusian Health Repository

Unique open and interoperable environmentto collect and manage all the scientific output generated by the Health System professionals

• To collect and manage in one, open and interoperable, place research outcomes, scientific output and quality health information for patients and citizens.

• To guarantee the long-term preservation and access to all the information generated by the health system professionals.

• To facilitate the knowledge transfer among the health system professionals and turn scientific discoveries into clinical practice.

• To provide quality health information for patients and citizens.

Goals

DSpace 1.6.2 (jspui):

- open source software- complies with the Andalusia

Government standards and policies

- large community of users and developers

- covers our main specifications

Andalusian Health Repository

Andalusian Health Repository

Institutional Subject

Structure:

Type of centresand their activities

Contents:

Strict quality criteriaprior to submitting

Collections:

kinds of documents

Specific qualifiers:

MeSH (Medical SubjectHeadings) as subjectsheadings

Sub-communities: provincesand centers

Collections

Customization of DSpace

Submission formMeSH ThesaurusAdvanced Search

Advanced Search

advanced.jsp

QueryArgs.java

dspace.cfg

input_forms.xml

dspace.cfg

QueryArgs.java

MeSH Thesaurus

navbar_default.jsp

mesh.xml

Input_forms.xml

http://www.nlm.nih.gov/mesh/filelist.html

Body Regions; A01Anatomic Landmarks; A01.1Breast; A01.2Mammary Glands, Human;A01.2.1Nipples; A01.2.2Head; A01.3Digestive System; A02Biliary Tract; A02.1 Body Regions

A01

Digestive System

A02

Anatomic Landmarks

A01.1

Breast

A01.2

Mammary Glands

A01.2.1

Nipples

A01.2.2

Head

A01.3 A02.1

MeSH Subject Headings

MeSH

Biliary Tract

AnatomyA

OrganismsB

<node label =«Medical Subject Headings» id=«MeSH»><isComposedBy>

<node label=«Anatomy» id=«A»><isComposedBy>

<node label=«Body Regions» id=«A01»>….

</isComposedBy></node><node label=«Organisms» id = «B»>

…</node>….

</isComposedBy></node>

label

id

isComposedBy

DSpace Controlled Vocabulary

XML used by DSpace

Anual Update: Batch Metadata Editing

[dspace]/bin/dspace metadata-export –f name_of_file.csv

Medical Subject Headings::Health Care::Environment and Public Health::Public Health::Epidemiologic Measurements::Biometry::Anthropometry::Body Mass Index || Medical Subject Headings::Health Care::Environment and Public Health::Public Health::Epidemiologic Measurements::Demography::Health Status::Health Status Disparities || Medical Subject Headings::Health Care::Environment and Public Health::Public Health::Epidemiologic Methods::Epidemiologic Study Characteristics as Topic::Epidemiologic Studies::Cohort Studies::Prospective Studies||Medical Subject Headings::Phenomena and Processes::Physiological Phenomena::Body Constitution::Body Weights and Measures::Body Size::Waist Circumference

Field MeSH of the document

[dspace]/bin/dspace metadata-import –f name_of_file_csv

Submission Form

Marc21 Metadato Label Artículos Artículo Carta Corrección Editorial Meeting abstract Revisión

Publicaciones SSPA Libro Parte de libro Revista Revisión de libro?

Informes tcos internos Informe

Guías y protocolos Guía/ Protocolo

Presentaciones a congresos Conferencia Presentación Póster Ponencia

Material de divulgación

Campaña Folleto Imagen Vídeo

100,110,111 700,711

dc.contributor.author Autor X X X X X X X

710 dc.contributor.authoraffiliation Afiliación X X X X X ¿

dc.contributor.group Grupo X X X X

245 dc.title Título X X X X X X X

dc.title.alternative Otros títulos

dc.date.issued Fecha de Publicación X X X X X X X

260 dc.publisher Editor X X X X X X

dc.identifier.citation Cita Bibliográfica X X X

440,490,800,810,811,830 760,733

dc.relation.ispartof Publicación X X X

dc.relation.ispartofseries Series X X X X

dc.relation.conferencename Congreso X

dc.relation.conferencedate Fecha del congreso X

dc.relation.conferenceplace Lugar del congreso X

019,020,080 dc.identifier Identificadores X X X X X X X

856 dc.relation.publisherversion Versión del editor X X X X X X X

Leader06 dc.type Tipo X X X X X X X

dc.language.iso Idioma X X X X X X X

650,651 dc.subject Palabras clave X X X X X X X

650 dc.subject.mesh Términos MeSH X X X X X X X

dc.subject.cip CIP/IPC

520 dc.description.abstract Abstract X X X X X X X

520 dc.description.otherabstracts Other Abstracts X X X X X X X

dc.description.sponsorship Patrocinadores X X X X X

500 dc.description Descripción X X X X X X X

505 dc.description.tableofcontents Contenido X X

dc.description.version Revisión por pares X X X X X

dc.type.version Versión X X X X X*

506 dc.rights.accessRights Derechos X X X X X X X

300 dc.format.extent Nº Páginas** X X X X X X

CartaCorrecciónEditorialMeeting abstractRevisión

Parte de libroRevistaRevisión de libro?

Informe Protocolo PresentaciónPósterPonencia

Campaña FolletoImagenVídeo

X X X X X X X

Type of documentsArtículo Libro Guía/ ConferenciaArtículo Libro internos Guía/ Conferencia

Artículos Publicaciones SSPA

Informes tcos

Guías y protocolos

Presentaciones a congresos

Material de divulgación

Collections

Autor

Afiliación

Grupo

Título

Otros

Fecha

Editor

Cita

8 Publicación

Series

Congreso

Fecha

Lugar

Identificadores

Versión

Tipo

Idioma

Palabras

Términos

CIP/IPC

Abstract

Other

Patrocinadores

Descripción

Contenido

Revisión

dc type Versión

dc.contributor.author

dc.contributor.authoraffiliation

dc.contributor.group

dc.title

dc.title.alternative

dc.date.issued

dc.publisher

dc.identifier.citation

dc.relation.ispartof

dc.relation.ispartofseries

dc.relation.conferencename

dc.relation.conferencedate

dc.relation.conferenceplace

dc.identifier

dc.relation.publisherversion

dc.type

dc.language.iso

dc.subject

dc.subject.mesh

dc.subject.cip

dc.description.abstract

dc.description.otherabstracts

dc.description.sponsorship

dc.description

dc.description.tableofcontents

dc.description.version

dc type version

CartaCorrecciónEditorialMeeting Revisión

ArtículoArtículo

Metadata

X

X X X X

Fields

Submission Form: dc_type, dc_type_subtype

input-forms.xml

item_submission.xml

doc.jsp

JSPDocStep.java

DocStep.java

Messages.properties

InProgressSubmission.javaWorkspaceItem.javaWorkflowItem.java

edit-metadata.jsp review-doc.jsp

WebUI

DCInputSet.jsp

dc.type.subtype dc.type (DRIVER)

Artículo

info:eu-repo/semantics/article

Carta Corrección Editorial Meeting Abstract

Revisión Revisión de libro

Libro info:eu-repo/semantics/book

Parte de libro info:eu-repo/semantics/bookPart

Informe técnico

info:eu-repo/semantics/report Guías y protocolos

Conferencia info:eu-repo/semantics/conferenceObject

Póster Presentación

Campaña publicitaria

info:eu-repo/semantics/other Folleto Imagen Vídeo

item_submission.xml

doc.jsp DocStep.javaJSPDocStep.java

User interface. Shows the form in the Web Browser

Processes the form. Contains auxiliary functions used by JSPDocStep.java

JSPDocStep.java

Store changes in the database

Submission Form: dc_type, dc_type_subtype

input-forms.xml

item_submission.xml

doc.jsp

JSPDocStep.java

DocStep.java

Messages.properties

InProgressSubmission.javaWorkspaceItem.javaWorkflowItem.java

WebUI

Can’t be modified by the user

edit-metadata.jsp

DCInputSet.java

Fields not shown in the form where the document is described

Submission Form: dc_type, dc_type_subtype

input-forms.xml

item_submission.xml

doc.jsp

JSPDocStep.java

DocStep.java

Messages.properties

InProgressSubmission.javaWorkspaceItem.javaWorkflowItem.java

edit-metadata.jsp

WebUI

DCInputSet.jsp

review-doc.jsp

Submission Form: dc_type, dc_type_subtype

input-forms.xml

item_submission.xml

doc.jsp

JSPDocStep.java

DocStep.java

Messages.properties

InProgressSubmission.javaWorkspaceItem.javaWorkflowItem.java

edit-metadata.jsp review-doc.jsp

WebUI

Batch Ingest

Impactia

Excel text file

Monographs

script

Bibliographic dabatases

Articles

Id WoS (Impactia) Dublin Core Qualified

AU authors dc.contributor.author

C1 auth-affi dc.contributor.authoraffiliation

dc.contributor.group

TI title dc.title*

PY year dc.date.issued

PU publishers dc.publisher

SO abbreviated_source_title

dc.identifier.citation VL volume

IS issue

BP page_start

EP page_end

dc.relation.publisherversion

SC Source-title dc.relation.ispartof

SN journal dc.identifier.issn

DI doi dc.identifier.doi

dc.identifier.pmid

dc.identifier.other (PMC)

dc.type (info:eu-repo/semantics/Article)

http://images.webofknowledge.com/WOK45/help/WOK/hft_inspec.html

Equivalences WoS and DC Qualified

Marc21 Metadato Label FEPU dc.date.issued Fecha de

Publicación LENG dc.language.iso Idioma T019 dc.identifier.dl DL T020 dc.identifier.isbn ISBN T022 dc.identifier.issn ISSN T080 dc.identifier.other Otro T245 dc.title Título T250 dc.citation Cita bibliográfica T260 dc.publisher Editor T300 dc.format.extent Nº Páginas T500 dc.description Descripción T501 dc.description Descripción T505 dc.description.tableofc

ontents Contenido

T520 dc.description.otherabstracts

Resumen

T525 dc.description Descripción T650 dc.subject Palabras Clave

T651 dc.subject Palabras Clave

T700 dc.contributor.author Autor

T710 dc.publisher Editor

T711 dc.relation.conferencename

T856 dc.relation.publisherversion Versión del editor

Equivalences Marc21 and DC Qualified

/usr/local/dspace/bin/import -a ptoro@bvsspa.es -c 10668/10 -s/home/dspace/Escritorio/archive_directory -m mapfile -w

-a: Add Items to DSpace-c: Destination Collection by their Handle or database ID-s: source of the items (directory)-w: Send the submission through collection’s workflow

Workflow:• Complete metadata• Assign MeSH terms• Check contents• Upload files

Conclusions

AndalusianHealth

Repository

Health System:

• Visibility of scientificoutput and relationshipsbetween centres

Health Systemprofessionals:

• Access to publisehd andunpublished materials

• Less duplication of work

Patients and citizens:

• Easier access to qualityhealth information

Esta obra está bajo una licencia Creative Commons Reconocimiento-NoComercial-Sin obras derivadas 3.0 España

Thank you pilar.toro@juntadeandalucia.es

teresa.matamoros@juntadeandalucia.es

veronica.juan@juntadeandalucia.es