andalusian andalusian health repository - repositoriosalud.es€¦ · andalusian . andalusian...

Promoting the scientific health output among professionals and providing citizens with quality health information

AndalusianAndalusian Health Repository Health Repository

Toro-Sánchez-Blanco, Pilar, Matamoros-Casas, Teresa, Juan-Quilis, VerónicaBiblioteca Virtual del Sistema Sanitario Público de Andalucía. Consejería de

Salud de la Junta de Andalucía, Seville, Spain

Índice

• Andalusian Public Health System

• Andalusian Health repository• Special features• Customization of DSpace

• Metadata Dublin Core Scheme• Integration MeSH Thesaurus• Advanced Search• Submission Form

• Batch Ingest

Andalusian Public Health System

SSPA:- 45 hospitals- 1520 primary healthcare centres- More than 20 research and teaching centres- 102.500 professionals

Andalusia:- More than 8 million inhabitants- 87,268 km2 (17.2% of Spain)- 8 provinces

http://upload.wikimedia.org/wikipedia/commons/b/bc/Mapa_sanitario_de_Andaluc%C3%ADa.png

http://upload.wikimedia.org/wikipedia/commons/c/c8/Hospitales_del_Servicio_Andaluz_de_Salud.png

Produced in electronic format

EvaluatedEvaluated by:

editorial editorial committeecommittee or

a peer peer reviewreview systemsystemScientific journals

Health System entities

Andalusian Health System Scientific Output

Monographs

Journals

Articles

Materials for patients and citizens

Plans and health programs

Guides and healthcare protocols

Research projects…

Medical care, research, health promotion and administrative activities

http://my.spill.com/profiles/blogs/947994:BlogPost:322342

Andalusian Health Repository

Unique open and interoperable environmentto collect and manage all the scientific output generated by the Health System professionals

• To collect and manage in one, open and interoperableopen and interoperable, place research outcomes, scientific output and quality health information for patients and citizens.

• To guarantee the longlong--term preservationterm preservation and accessaccess to all the information generated by the health system professionals.

• To facilitate the knowledge transfer among the health system professionals and turn scientific discoveries into clinical practiceinto clinical practice.

• To provide quality health informationquality health information for patients and citizens.

Goals

DSpace 1.6.2:

- open source software- complies with the Andalusia Government standards and policies

- large community of users and developers

- covers our main specifications



Institutional Subject

Structure:

Type of centres and their activities

Contents:

Strict quality criteria prior to submitting

Collections:

kinds of documents

Specific qualifiers:

MeSH as subjects headings

Sub-communities: provinces and centers

Collections

Customization of DSpace

Submission formMeSH ThesaurusAdvanced Search

Advanced Search

advanced.jsp

QueryArgs.java

dspace.cfg

input_forms.xml

dspace.cfg

QueryArgs.java

MeSH Thesaurus

navbar_default.jsp

mesh.xml

Input_forms.xml

http://www.nlm.nih.gov/mesh/filelist.html

Body Regions; A01Anatomic Landmarks; A01.1Breast; A01.2Mammary Glands, Human;A01.2.1Nipples; A01.2.2Head; A01.3Digestive System; A02Biliary Tract; A02.1 Body Regions

A01

Digestive System

A02

AnatomicLandmarks

A01.1

Breast

A01.2

Mammary Glands

A01.2.1

Nipples

A01.2.2

Head

A01.3 A02.1

Branc

h

Branc

h

MeSH Subject Headings

MeSH

Biliary Tract

AnatomyA

OrganismsB

<node label =«Medical Subject Headings» id=«MeSH»><isComposedBy>

<node label=«Anatomy» id=«A»><isComposedBy>

<node label=«Body Regions» id=«A01»>….

</isComposedBy></node><node label=«Organisms» id = «B»>

…</node>….

</isComposedBy></node>

label

id

isComposedBy

DSpace Controlled Vocabulary

XML used by DSpace

Anual Update: Batch Metadata Editing

[dspace]/bin/dspace metadata-export –f name_of_file.csv

Medical Subject Headings::Health Care::Environment and Public Health::PublicHealth::Epidemiologic Measurements::Biometry::Anthropometry::Body Mass Index||Medical Subject Headings::Health Care::Environment and Public Health::PublicHealth::Epidemiologic Measurements::Demography::Health Status::Health Status Disparities||Medical Subject Headings::Health Care::Environment and Public Health::PublicHealth::Epidemiologic Methods::Epidemiologic Study Characteristics as Topic::Epidemiologic Studies::Cohort Studies::Prospective Studies||MedicalSubject Headings::Phenomena and Processes::Physiological Phenomena::Body Constitution::Body Weights and Measures::Body Size::Waist Circumference

Field MeSH of the document

[dspace]/bin/dspace metadata-import –f name_of_file_csv

Submission Form

Marc21 Metadato Label ArtículosArtículoCartaCorrecciónEditorialMeeting abstractRevisión

Publicaciones SSPALibroParte de libroRevistaRevisión de libro?

Informes tcos

internosInforme

Guías y protocolosGuía/Protocolo

Presentaciones a congresosConferenciaPresentaciónPósterPonencia

Material de divulgación

Campaña FolletoImagenVídeo

100,110,111700,711

dc.contributor.author Autor X X X X X X X

710 dc.contributor.authoraffiliation Afiliación X X X X X ¿

dc.contributor.group Grupo X X X X

245 dc.title Título X X X X X X X

dc.title.alternative Otros títulos

dc.date.issued Fecha de Publicación X X X X X X X

260 dc.publisher Editor X X X X X X

dc.identifier.citation Cita Bibliográfica X X X

440,490,800,8

10,811,830760,733

dc.relation.ispartof Publicación X X X

dc.relation.ispartofseries Series X X X X

dc.relation.conferencename Congreso X

dc.relation.conferencedate Fecha del congreso X

dc.relation.conferenceplace Lugar del congreso X

019,020,080 dc.identifier Identificadores X X X X X X X

856 dc.relation.publisherversion Versión del editor X X X X X X X

Leader06 dc.type Tipo X X X X X X X

dc.language.iso Idioma X X X X X X X

650,651 dc.subject Palabras clave X X X X X X X

650 dc.subject.mesh Términos MeSH X X X X X X X

dc.subject.cip CIP/IPC

520 dc.description.abstract Abstract X X X X X X X

520 dc.description.otherabstracts Other

Abstracts X X X X X X X

dc.description.sponsorship Patrocinadores X X X X X

500 dc.description Descripción X X X X X X X

505 dc.description.tableofcontents Contenido X X

dc.description.version Revisión por pares X X X X X

dc.type.version Versión X X X X X*

506 dc.rights.accessRights Derechos X X X X X X X

300 dc.format.extent Nº

Páginas** X X X X X X

Type of documentsType of documents

CollectionsCollectionsMetadataMetadata

FieldsFields

Submission Form: dc_type, dc_type_subtype

input-forms.xml

item_submission.xml

doc.jsp

JSPDocStep.java

DocStep.java

Messages.properties

InProgressSubmission.javaWorkspaceItem.javaWorkflowItem.java

edit-metadata.jsp review-doc.jsp

WebUI

DCInputSet.jsp

item_submission.xml

doc.jsp DocStep.javaJSPDocStep.java

User interface. Shows the form in the Web Browser

Process the form. Contains auxiliary functions used by JSPDocStep.java

JSPDocStep.java

Store changes in the database


input-forms.xml

item_submission.xml

doc.jsp

JSPDocStep.java

DocStep.java

Messages.properties


WebUI

Can’t be modified by the user

edit-metadata.jsp

DCInputSet.java

Fields not shown in the form where the document is described


input-forms.xml

item_submission.xml

doc.jsp

JSPDocStep.java

DocStep.java

Messages.properties


edit-metadata.jsp

WebUI

DCInputSet.jsp

review-doc.jsp


input-forms.xml

item_submission.xml

doc.jsp

JSPDocStep.java

DocStep.java

Messages.properties


edit-metadata.jsp review-doc.jsp

WebUI

Batch Ingest

Impactia

Excel text file

ArticlesMonographs

scrip t

Id WoS (Impactia) Dublin Core Qualified

AU authors dc.contributor.author

C1 auth-affi dc.contributor.authoraffiliation

dc.contributor.group

TI title dc.title*

PY year dc.date.issued

PU publishers dc.publisher

SO abbreviated_source_title

dc.identifier.citationVL volume

IS issue

BP page_start

EP page_end

dc.relation.publisherversion

SC Source-title dc.relation.ispartof

SN journal dc.identifier.issn

DI doi dc.identifier.doi

dc.identifier.pmid

dc.identifier.other (PMC)

dc.type (info:eu- repo/semantics/Article)

http://images.webofknowledge.com/WOK45/help/WOK/hft_inspec.html

Equivalences WoS and DC QualifiedHere you can see the equivalences between WOS fields and our metadata schema.

Marc21 Metadato LabelFEPU dc.date.issued Fecha de

PublicaciónLENG dc.language.iso Idioma

T019 dc.identifier.dl DLT020 dc.identifier.isbn ISBNT022 dc.identifier.issn ISSNT080 dc.identifier.other Otro

T245 dc.title Título

T250 dc.citation Cita bibliográficaT260 dc.publisher EditorT300 dc.format.extent Nº Páginas

T500 dc.description DescripciónT501 dc.description DescripciónT505 dc.description.tableofc

ontentsContenido

T520 dc.description.other abstracts

Resumen

T525 dc.description Descripción

T650 dc.subject Palabras Clave

T651 dc.subject Palabras Clave

T700 dc.contributor.author Autor

T710 dc.publisher Editor

T711 dc.relation.conferencen ame

T856 dc.relation.publisherversion Versión del editor

Equivalences Marc21 and DC Qualified

/usr/local/dspace/bin/import -a [email protected] -c 10668/10 -s /home/dspace/Escritorio/archive_directory -m mapfile -w

-a: Add Items to DSpace-c: Destination Collection by their Handle or database ID-s: source of the items (directory)-w: Send the submission through collection’s workflow

Workflow: • Complete metadata• Assign MeSH terms• Check contents• Upload files

mailto:[email protected]

Conclusions

Andalusian Health

Repository

Health System:

•Visibility of scientific output and relationships between centres

Health System professionals:

•Access to publisehd and unpublished materials•Less duplication of work

Patients and citizens:

•Easier access to quality health information

Thank you

andalusian andalusian health repository - repositoriosalud.es€¦ · andalusian . andalusian...

Documents