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Page 1: BIBUOGRAPBY - shodhganga.inflibnet.ac.inshodhganga.inflibnet.ac.in/bitstream/10603/16040/... · Bibliography Burns, L.S., Smith, S.G.J. and Dorman, C.J. (2000). Interaction of FimB

BIBUOGRAPBY

Page 2: BIBUOGRAPBY - shodhganga.inflibnet.ac.inshodhganga.inflibnet.ac.in/bitstream/10603/16040/... · Bibliography Burns, L.S., Smith, S.G.J. and Dorman, C.J. (2000). Interaction of FimB

Bibliography

Abraham, J.M., Freitag, C.S., Clements, J.R. and Eisenstein, B.l. (1985). An invertible element of DNA controls phase variation of type 1 fimbriae of Escherichia coli. Proc. Nat/. Acad. Sci. USA. 82: 5724-5727.

Alberts, B.M., Morris, S., Mace, D., Sinha, N., Bittner, M., Moran, L. (1975). DNA synthesis and its regulation, ed. M. Goulin, P. Hanawalt, pp. 241-269. Menlopark, Calif: Benjamin.

Alexander, D.C. and Jensen, S.E. (1998). Investigation of the Streptomyces clavuligerus cephamycin C gene cluster and its regulation by the CcaR protein. J. Bacteriol. 180: 4068-4079.

Allet, B. and Bukhari, A. I (1975). Analysis of bacteriphage Mu and A.-Mu hybrid DNAs by specific endonucleases. J. Mol. Bioi. 92: 529-540.

Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, N. and Lipman, DJ. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acid. Research 25: 3389-3402.

Aparicio, J., Fou~es, · R., Mendes, M.V., Olivera, N. and Martin, J.F. (2000). A complex multienzyme system encoded by five polyketide synthase genes is involved in the biosynthesis of the 26-membered polyene macrolide pimaricin in Streptomyces natalensis. Chem. Bioi. 7: 895-905.

Aparicio, J .F., Colina, A.J ., Ceballos, E. and Martin, J.F. ( 1999). The biosynthetic gene cluster for the 26-membered ring polyene mactolide pimaricin. J. Bioi. Chem. 274: 10133-10139.

Arcangioli, B. and Lahondes, R. (2000). Fission yeast switches mating type by replication-recombination coupled process. EMBO. J. 19: 1389-1396.

August, P.R., Tang, L.l., Yoon, Y.J., Ning, S., Muller, R., Yu, T.W., Taylor, M., Hoffinan, D., Kim, C.G., Zhang, X., Hutchinson, C.R. and Floss, H. G. 0 998). Biosynthesis of the ansamycin antibiotic rifamycin. Deduction from the molecular analysis of the rif biosynthetic gene cluster of Amycolatopsis medite"aneiS699. Chem. Bioi. 5:69-79.

Bachi, G. and Arber, W. (1977) .. Physical mapping of Bglll, BamHI, EcoRI, Hindiii and Psti restriction fragments of bacteriophage PI DNA. Mol. Gen. Genet. 153: 311-324.

Bachs, L., Pares, A., Elena, M., Piera, C. and Rodes, J. (1992). Effects of long-term rifampicin administration in primary billiary cirrhosis. Gastroenterology 102: 2077-2080.

Baltz, R.H., Hahn, D.R., McHenney, M.A. and Solenberg, P.J. (1992). Transposition ofTn5096 and related transposons in Streptomyces species. Gene 115: 61-65.

74

Page 3: BIBUOGRAPBY - shodhganga.inflibnet.ac.inshodhganga.inflibnet.ac.in/bitstream/10603/16040/... · Bibliography Burns, L.S., Smith, S.G.J. and Dorman, C.J. (2000). Interaction of FimB

Bibliography

Barakett, V., Lesage, D., Delisle, F., Vergez, P. and Petit, J.C. (1993). Killing kinetics of vancomycin and rifamycin tested alone and in combination against penicillin-resistant Streptococcus pneumoniae. Eur. J. Clin. Microbiol. Infect. Dis. 12: 69-71.

Barna, J.C.J. and Williams, D.H. (1984). The structure and mode of glycopeptide antibiotics of vancomycin group. Microbiol. 38: 339-357.

Bevitt, D.J., Cortes, J., Haydock, S.F., Leadlay, P.F. (1992). 6-Deoxyerythronolide-B synthase 2 from Saccharopolyspora erythraea cloning of the structural gene, sequence analysis and inferred domain structure of the multifunctional enzyme. Eur. J. Biochem. 204: 39-49.

Bignell, D.R., Warawa, J.L., Strap, J.L., Chater, K.F., Leskiw, B.K. (2000). Study of bldG locus suggest that an anti-anti-sigma factor and an anti-sigma factor may be involved in Streptomyces coelicolor antibiotic production and sporulation. Microbiology.146: 2161-2173.

Birch, A.J. and Donovan, F.W. (1953). Australian ofChem. 112:431-442.

Bimboim, H.C. and Doly, J. (1979). A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic A9ids. Res. 7: 1513.

Bloch, C.A., Stocker, B.A.D. and Orndorf, P.E. (1992). A key role for type 1 pili in enterobacterial communicability. Mol. Microbiol. 6: 697-701.

Blomfield, I.C., Calie, P.J., Eberhardt, K.J., McClain, M.S., Eisenstein, B.l. (1993). Lrp stimulates phase variation oftype1 fimbriae in Escherichia coli K-12. J. Bacteriol. 175: 27-36.

Bohm, 1., Holzbaur, T.E., Hanefeld, U., Cortes, J., Staunton, J. and Leadley, P.F. (1998).· Engineering of a minimal modular polyketide synthase and targeted alteration of a stereospecifiCity of polyketide chain extension. Chem. Bioi. 5: 407-412.

Borst, P. and Cross, G.A.M. (1982). Molecular basis for trypanosome antigenic variation. Cell. 29: 291-303.

Bradley, D.E. (1967a). Ultrastructure of bacteriophages and bacteriocins. Bacteriol. Rev. 31: 230-314.

Bradley, S.G. and Ritzi, D. (1967b). Electron microscopical studies of actinophage multiplication. J. Gen. Virol. 1: 285-290.

Burke, J., Schneider, D. and Westpheling, J. (2001). Generalized transduction in Streptomyces coelicolor. Proc.Natl. Acad. Sci. USA 98: 6289-6294.

75

Page 4: BIBUOGRAPBY - shodhganga.inflibnet.ac.inshodhganga.inflibnet.ac.in/bitstream/10603/16040/... · Bibliography Burns, L.S., Smith, S.G.J. and Dorman, C.J. (2000). Interaction of FimB

Bibliography

Burns, L.S., Smith, S.G.J. and Dorman, C.J. (2000). Interaction of FimB integrase with the fimS invertible DNA element in Escherichia coli in vivo and in vitro. J. Bacteriol. 182: 2953-2959.

Cann, A.J. (1997). Principles of Molecular Virology, Second Edition, Academic Press, California. pp. 97-125.

Chater, K.F. (1986). Streptmyces phages and their applications to Streptomyces genetics. The.bacteria. Vol. IX, Academic Press Inc. pp. 119-156.

Chater, K.F. and Carter, A.T. (1978). Restriction of bacteriophage in Streptomyces a/bus P (CMI52766) by endonuclease Sa/Pl. J. Gen. Microbiol. 109: 181-185.

Chater, K.F. and Carter, A.T. (1979). A new wide host range, temperate bacteriophage (R4) of Streptomyces and its interactions with some restriction­modification systems. J. Gen. Microbiol. 115: 431-442.

Chater, K.F. and Carter, A.T. (1979). A new wide host-range temperate bacteriophage, R4, of Streptomyces and its interaction with some restriction­modification systems. J. Gen. Microbiol. 115: 431-442.

Chater, K.F. and Wilde, L.C. ( 1976). Restriction of a bacteriophage of Streptomyces a/bus G involving endonuclease San. J. Bacteriol. 128: 644-650.

Chater, K.F. and Wilde, L.C. (1980) Streptomyces a/bus G mutants defective in the Sal GI restriction-modification system. J. Gen. Microbiol. 116: 323-334.

Chen, S., Xue, Y., Sherman, D.H. and Renolds, K.A. (2000). Mechanisms of molecular recognition in the pikromycin polyketide synthase. Chem. Bioi. 7: 907-918.

Chiao, J.S., Xia, T.H., Mei, B.G., Jin, Z.K. and Gu, W.L. (1995). Genetics and Biochemistry of antibiotic production, L.C. Vining, C. Stuttard, Eds. Butterworth-Heinemann, Boston. pp. 4n-498.

Chung, S.T. and Molnar, M.B. (1983). Characterization and development of Streptomyces gene cloning vectors I. Streptomyces fradiae. In "Trends in Antibiotic Research" (H. Umezawa, A.L. Demain, T. Hata and C.R. Hutchinson eds.) Jpn. Antibiot. Res. Assoc. Tokyo pp 42-47.

Cortes, J., Haydock, S.F., Roberts, G.A., Bevitt, D.J., Leadlay, P.F. (1990). An unusually large multifunctional polypeptide in the erythromycin-producing polyketide synthase of Saccharopolyspora erythraea. Nature 348: 176-178.

Cox, K.L. and Baltz, R.H. (1984). Restriction of bacteriophage plaque formation in Strptomyces spp. J. Bacteriol. 159: 499-504.

Coyette, J. and Calberg-Bacq, C.M. ( 1967). Morphological characteristics of three new actinophages. J. Gen. Virol. 1: 13-18.

76

Page 5: BIBUOGRAPBY - shodhganga.inflibnet.ac.inshodhganga.inflibnet.ac.in/bitstream/10603/16040/... · Bibliography Burns, L.S., Smith, S.G.J. and Dorman, C.J. (2000). Interaction of FimB

Bibliography

Denoya, C.D. et al. and Wernau, W.C. (1995). A second branched-chain a-keto acid dehydrogenase gene cluster (bkdFGH) from Streptomyces avermitilis: Its relationship to avermectin biosynthesis and the construction of bkdF mutant suitable for the prpduction of novel antiparasitic avermectins. J. Bacteriol. 177: 3504-3511.

Donadio, S., McAlpine, J.B., Sheldon, P.J., Jackson, M. and Katz, L. (1993). An erythromycin analog produced by reprogramming of polyketide synthesis. Proc. Nat/. Acad. Sci USA. 90: 7119-7123.

Donadio, S., Staver, M.J., McAlpine, J.B., Swanson, S.J., Katz, L. (1991). Modular organization of genes required for complex polyketide biosynthesis. Science. 252: 675-679.

Dorman, C.J. and Higgins, C.F. (1987). Fimbrial phase variation in Escherichia coli: dependence on integration host factor and homologies with other site-specific recombinases. J. Bacteriol. 169: 3840-3843.

Dowding, J.E. (1973). Characterization of a bacteriophage virulent for Streptomyces coelicolor A3(2). J. Gen.Microbiol. 76: 163-176.

Du, L., Sanchez, C., Chen, M., Edwards, D.J. and Shen, B. (2000). The biosynthetic gene cluster for the antitumor drug bleomycin from Streptomyces verticilis A TCC 15003 supporting functional interactions between nonribosomal peptide synthetases and polyPeptide synthase. Chern. Bioi. 7: 623-642.

Egel, R. (1977). Frequency of mating-type switching in homothallic fission yeast. Nature 266: 172-174.

Eisentein, B.l., ·Sweet, D.S., Vaughn, V. and Friedman, D.l. (1987). Integration host factor is required for the DNA inversion that controls phase variation in Escherichia coli. Proc. Nat/. Acad. Sci USA 84: 6506-6510.

Elliott, M., Damji, F., Passantino, R., Chater, K. and Leskin, B. (1998). A bid gene of Streptomyces coelicolor A3(2): a regulatory gene involved in morphogenesis and antibiotic production. J. Bacteriol. 180: 1549-1555.

Epp., J.K., Huber, M.L.B.', Turner, J.R., Goodson, T. and Schoner, B.E. (1989). Production of a hybrid macrolide antibiotic in Streptomyces ambofaciens and Streptomyces lividans by introduction of a cloned carbomycin biosynthetic gene from Streptomyces thermotolerans. Gene. 85: 293-301.

Escarmis, C. and Salas, M. (1982). Nucleotide sequence ofthe early genes 3 and 4 of bacteriophage phi29. Nucleic Acids. Res. 10: 5785-5798.

Fernandez-Mareno, M.A., Caballero, J.L., Hopwood, D.A. and Malpartida, F. (1991). The act cluster contains regulatory and antibiotic export genes, direct targets for translational control by bldA. tRNA gene of Streptomyces. Cell. 66: 769-780.

77

Page 6: BIBUOGRAPBY - shodhganga.inflibnet.ac.inshodhganga.inflibnet.ac.in/bitstream/10603/16040/... · Bibliography Burns, L.S., Smith, S.G.J. and Dorman, C.J. (2000). Interaction of FimB

Bibliography

Ford, M.E., Sarkis, GJ., Belanger, A.E., Hendrix, R.W. and Hatfull, G.F. (1998a). Genome structure of mycobacteriophage D29: Implications for phage evolution. J. Mol. Bioi. 279: 143-164.

Ford, M.E., Stenstrom, C., Hendrix, R.W. and Hatfull, G.F. (1998b). Mycobacterophage TM4, genome structure and gene expression. Tubercle and Lung Disease 79: 63-73.

Fouces, R., Mellado, E., Diez, B. and Barredo, J.L. (1999). The tylosin biosynthetic cluster from Streptomyces fradiae: genetic organization of the left region. Microbiology 145: 855-868.

Gaisser, S., Trefzer, A., Stockert,S., Kirschning, A. and Bechthold, A. (1997). Cloning of an avilamycin biosynthetic gene cluster from Streptomyces • viridochromogenes Tu57. J. Bacterial. 179: 6271-6278.

Gaily, D.L., Leathart, J. and Blomfield, I.C. (1996). Interaction of FimB and FimE with fim switch that controls the phase variation of type 1 fimbriae in E. coli K-12. Mol. Microbial. 21: 725-738.

Gehring, A.M., Nodwell, J .R., Baverley, S.M. and Losick, R. (2000). Genomewide insertional mutagenesis in Streptomyces coelicolor reveals additional genes involved in morphological differentiation. Proc. Nat/. Acad. Sci. USA 97: 9642-9647.

Ghisalba, 0. and Nuesch, J. (1981). A genetic approach to a biosynthesis of rifamycin chromosphere in Nocardia mediterranei. Isolation and· identification of 3-amino-5-hydroxybenzoic acid as a direct precursor of the seven carbon amino starter-unit. J. Antibiotic. 34: 64-71.

Goulian, M., Lucas, Z.J., Kornberg, A.(1968) Enzymatic synthesis of deoxyribo­nucleic acid. XXV. Purification and properties of deoxyribonucleic acid polymerase induced by infection with phage T4. J. Bioi. Chem. 243: 627-638.

Grundy, F.J. and Howe, M.M. (1984). Involvement of the invertible G segment in bacteriophage Mu tail fibre biosynthesis. Virology 134: 266-317.

Guo, F., Gopaul, D;N. and Van Duyne, G .D. (1997). Structure of Cre recombinase complexed with DNA in a site-specific recombinase synapse. Nature 389.: 40-46.

Hahn, D.R., McHenpey, M.A. and Baltz, R.H. (1991). Properties of Streptomycete temperate bacteriophage FP43. J. Bacterial. 173: 3770-3775.

Hatfull, G.F. and Sarkis, G.J. (1993). DNA sequence, structure and gene expression of mycobacteHophage L5: a phage system for mycobacterial genetics. Mol. Microbial. 7(3): 395-405.

78

Page 7: BIBUOGRAPBY - shodhganga.inflibnet.ac.inshodhganga.inflibnet.ac.in/bitstream/10603/16040/... · Bibliography Burns, L.S., Smith, S.G.J. and Dorman, C.J. (2000). Interaction of FimB

Bibliography

Henderson, I.R., Owen, P. and Nataro, J.P. (1999). Molecular switches-the ON and OFF ofbacterial phase variation. Mol. Microbiol. 33: 919-932.

Herron, P.R., Evans, M.C., Dyson, P.J. (1999). Low target site specificity of an IS6JOO-based, mini-transposon, Tnl792, developed for transposon mutagenesis of antibiotic-producing Streptomyces. FEMS Micro bioi. Let. 171: 215-221..

Hopwood, D.A. (1988). Towards an understanding of gene switching in Streptomyces, the basis of sporulation and antibiotic production. Proc. Rny. Soc. London B 235: 121-138.

Hopwood, D.A. (1997). Genetic contributions to understanding polyketide synthases. Chem. Rev. 97: 2485-2497.

Hopwoocl, D.A. et al. and Schremp[, H. (1985). Genetic manipulation of Streptomyces, a laboratory manual. The John Innes Foundation, Norwich, UK.

Hopwood, D.A., Malpartida, F., Keiser, H.M., Ikeda, H., Duncan, J., Fugii, I., Rudd, B.A.M., Floss, H.G. and Omura, S. (1985). Production of 'hybrid' antibiotics by genetic engineering. Nature 314: 642-644.

Howe, M.M., Schumm, J.M. and Taylor, A.L. (1979). The S and U genes of bacteriophage Mu are located in the invertible G segment of Mu DNA. Virology 92: 108-124.

Hsu, M.T. and Davidson, N. (1974). Electron microscope heteroduplex study of the heterogeneity ofMu phage and prophage DNA. Virology 58: 229-239.

Hu, Z., Hunziker, D., Hutchinson, C.R. and Khosla, C. (1999). A host-vector system for analysis and manipulation of rifamycin polypeptide biosynthesis in Amycolatopsis mediterranei. Microbiology 145: 2335-2341.

Huang, C.-C., Hearst, J.E., Alberts, B.M. (1989). Two types of replication proteins increase the rate at which T4 DNA polymerase traverses the helical regions in a single-stranded DNA template. J. Bioi. Chem. 256: 4087-4094.

Huber, H.E., Russel, M., Model, P., Richardson, C.C. (1986). Interaction of mutant thioredoxins of Escherichia coli with the gene 5 protein of phage T7. The redox capacity of thioredoxin is not required for stimulation of DNA polymerase activity. J. Bioi. Chem. 261: 15006-15012.

Huber, H.E., Tabor, S. and Richardson, C.C. (1987). Escherichia coli thioredoxin stabilizes complexes of bacteriophage T7 DNA polymerase and primed templates. J. Bioi. Chem. 262: 16224-16232.

Hunziker, D., Yu, T.W., Hutchinson, C.R. Floss, H.G. and Khosla, C. (1998). Primer unit specificity in rifamycin biosynthesis principally resides in the later stages

·ofthe biosynthetic pathway. J. Am. Chem. Soc. 120: 1092-1093.

79

Page 8: BIBUOGRAPBY - shodhganga.inflibnet.ac.inshodhganga.inflibnet.ac.in/bitstream/10603/16040/... · Bibliography Burns, L.S., Smith, S.G.J. and Dorman, C.J. (2000). Interaction of FimB

Bibliography

Hutchinson, C.R. and Fujii, I. (1995). Polyketide synthase gene manipulation: a structure function approach in engineering novel antibiotics. Annu. Rev. Mic;robiol. 49: 201-238.

Iida, S., Meyer, J., Kennedy, K.E. and Arber, W. (1982). A site-specific conservative recombination system carried out by bacteriophage Pl. Mapping the recQmbinase gene cin and the cross-over sites cix for the inversion of the C segment. EMBO. J. 1: 1445-1453.

Inman, R.B. and Schnos (1971): Some morphological properties ofP4 bacteriophage and P4 DNA. Virology. 44:67-72.

Jackson, E.N., Jackson, D.A. and Deans, R.J. (1978). EcoRI analysis ofbacteriophage P22 DNA packaging. J.Mol. Bioi. 118: 365-388.

Jacobsen, J.R., Hutchinson, C.R., Cane, D.E. and Khosla, C. (1997). Precursor­directed biosynthesis of erythromycin analogs by an engineered polyketide synthase. Science 277: 367-369.

Jordan, M., Meile, L. and Leisinger, T. (1989). Organization of Methanobacterium thermoautotrophicum bacteriophage wMI DNA. Mol. Gen. Genet. 220: 161-164.

Jung, G.H., Laevitt, M.C., Hsieh, J.C. and Jto, J. (1987). Bacteriophage PRDI DNA polymerase: evolution of DNA polymerases. Proc. Nat/. Acad Sci. USA 84: 8287-8291.

Kahmann, R. (1984). The mom gene of bacteriophage Mu. Curr. Top. Microbiol. Immunol. 108: 29-47.

Kahmann, R., Rudt, F., Koch, C. and Mertens, G. (1985). G inversion in bacteriophage Mu DNA is stimulated by a site within the invertase gene and a host factor. Cell41: 771-780.

Kamp, D. and Kahmann, R. ( 1981 ). The relationship of two invertible segments in bacteriophage Mu and Salmonella typhimurium DNA. Mol. Gen. Genet. 184: 564-5,66.

Kamp, D. and Sandlulache, R. (1983). Recognition of cell surface receptors is controlled by invertible DNA of phage Mu. FEMS Microbiol. Lett. 16: 131-135. .

Katz, L. and Donadio, S. (1993). Polyketide synthesis: prospects for hybrid antibiotics. Annu. Rev. Microbiol. 47: 875-912.

Kawula, T.H. and Orndorff, P.E. (1991). Rapid site-specific DNA inversion in Escherichia coli mutants lacking the histone like protein H-NS. J. Bacteriol. 173: 4116-4123.

80

Page 9: BIBUOGRAPBY - shodhganga.inflibnet.ac.inshodhganga.inflibnet.ac.in/bitstream/10603/16040/... · Bibliography Burns, L.S., Smith, S.G.J. and Dorman, C.J. (2000). Interaction of FimB

Bibliography

Kelman, Z. and O'Donnell, M. (1995). DNA polymerase III holoenzyme: structure and function of a chromosomal replicating maching. Annu. Rev. Biochem. 64: 171-200.

Khosla, C., Gokhale, R.S., Jacobsen, J.R. and Cane, D.E. (1999). Tolerance and specificity ofpolyketide synthases. Annu. Rev. Biochem. 68: 219-253.

Kim, C.G. et al., and Floss, H.G. (1996). Biosynthesis of 3-amino-5-hydroxybenzoic acid, the precursor of mC7N units in ansamycin antibiotics. J Amer. Chern. Soc. 18: 7486-7491.

Kim, C.G., Yu, T.W., Fryhle, C., Handa, S. and Floss, H.G. (1998). 3-Amino-5-hydroxybenzoic acid (AHBA) synthase, the terminal enzyme in the formation of the precursor of mC7N units in rifamycin and related antibiotics. J Bioi. Chern. 273: 6030-6040.

Klaus, S., Triebel, H., Hartmann, M., Walter, A., Walter, F., Zopel, P., Bar, H. and Hrodecna, Z. (1979). Molecular characterization of the genomes of actinophages SH3, SH10, SHll and SH12 infection Streptomyces hygroscopicus. Mol. Gen. Genet. 172: 319-327.

Klemm, P., Jorgensen, B.J., van Die, 1., deRee, H. and Bergmans, H. (1985). The.fim genes respbnsible for synthesis of type 1 fimbriae in Escherichia coli. Mol. Gen. Genet. 199:410-414.

Kong, H. eta/. and Roberts, R.J. (2000). Functional analysis of putative restriction modification system genes in the Helicobacter pylori J99 genome. Nucleic Acids. Res. 28: 3216-3223.

Kong, X.-P., Onrust, R., O'Donnell, M. and Kuriyan, J. (1992). Three dimensional structure of the f3-subunit of Escherichia coli DNA polymerase III holoenzyme: a sliding DNA clamp. Ce//69: 425-437.

Kornberg, A. and Baker, T. (1992). DNA replication 2nd edn. W.H. Freeman and Company, New York.

Kossykh, V.G., Schlagman, S.L. and Hatman, S. (1997). Comparative studiesofthe phage T2 and T4 DNA ([N6-Adenine] Methyltransferases: Amino acid changes that affect catalytic activity. J Bacteriol. 179: 3239-3243.

Kossykh, V.G., Schlagman, S.L. and Hattmann, S. (1995). Phage T4 DNA [N6-adenine] Methyltransferase, overexpression, purification and characterization. J Bioi. Chem. 270: 14389-14393.

Kruger, D.H. and Bickle, T.A. (1983). Bacteriophage survival: Multiple mechanisms for avoiding the deoxyribonucleic acid restriction systems of their hosts. Microbiol. Rev. 47: 345-360.

81

Page 10: BIBUOGRAPBY - shodhganga.inflibnet.ac.inshodhganga.inflibnet.ac.in/bitstream/10603/16040/... · Bibliography Burns, L.S., Smith, S.G.J. and Dorman, C.J. (2000). Interaction of FimB

Bibliography

Kulasekara, H.D. and Blomfield, I.C. (1999). The molecular basis for the specificity of fimE in the phase variation of type1 fimbriae of E. coli K-12. Mol. Microbiol. 31: 1171-1181.

Laemmli, U.K. (1970). Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227: 680.

Laevitt, M.C. and Ito, J. (1989). T5 DNA polymerase: structural functional relationships to other DNA polymerase. Proc. Nat/. Acad. Sci. USA 86: 4465-4469.

Lamm, N., Wang, Y., Methew, C.K., Ruger, W. (1988). Deoxycytidylate hydroxymethylase gene of bacteriophage T4. Nucleotide sequence determination and overexpression of the gene. Eur. J. Biochem. 172: 553-563.

Lancini, R. and Cavalieri, B. (1997). Biotechnology of Antibiotics, 2nd Ed. W.R. Strohl, Ed. Dekker, New York. pp. 521-549.

Lee, S.S., Fitch, D., Flajnik, M.F. and Hsu, E. (2000). Rearrangement of immunoglobulin genes in shark germ cells. J. Exp. Med 191: 1637-1648.

Lewin, B. (1987). Genes VI. Oxford University Press, Oxford. pp 471-504.

Lomovskaya, N.D., Chater, K.F. and Mkrtumian, N.M. (1980). Genetics and molecular biology of Streptomyces bacteriophages. Microbiol. Rev. 44: 206-229.

Lomovskaya, N.D., Voeykova, T.A. and Mkrtumian, N.M. (1977). Construction and properties of hybrids obtained in interspecies crosses between Streptomyces coelicolor A3(2) and Streptomyces griseus Kr15. J. Gen. Microbiol. 98: 187-198.

Lynen, F. (1980). On the structure of fatty acid synthetase ofyeast. Eur. J. Biochem. 112: 431-442.

MacNeil, D.J. (1988). Characterization of a unique methyl-specific restriction system in Streptomycesavermitilis. J. Bacteriol. 170: 5607-5612.

Maki, H., Maki, S. and Kornberg, A. (1988). DNA polymerase III holoenzyme of Escherichia coli. The holoenzyme is an assymmetric dimer with twin active sites. J. Bioi. Chem. 263: 6570-6578.

Maki, S. and Kornberg, A. (1988). DNA polymerase III holoenzyme of Escherichia coli. A novel complex including the y-subunit essential for processive synthesis. J. Bioi. Chem. 263: 6555-6560.

Mao, X., Varoglu, M. and Sherman, D.H. (1999). Molecular characterization and analysis of the biosynthetic gene cluster for the antitumor antibiotic mitomycin C from Streptomyces lavendulae NRRL2564. Chem. Bioi. 6:251-263.

82

Page 11: BIBUOGRAPBY - shodhganga.inflibnet.ac.inshodhganga.inflibnet.ac.in/bitstream/10603/16040/... · Bibliography Burns, L.S., Smith, S.G.J. and Dorman, C.J. (2000). Interaction of FimB

Bibliography

Marsden, A.F.A., Wikinson, B., Cortes, J., Dunster, N.J., Staunton, J. and Leadlay, P.F. (1998). Engineering broader specificity into an antibiotic producing polyketide synthase. Science 279: 199-202.

Matsumoto, K., Takano, H., Kim, C.l., and Hirokawa, H. (1989). Primary strucutre of bacteriophage M2 DNA polymerase: conserved segments within protein -priming DNA polymerase I of Escherichia coli. Gene 84: 247-255.

Matsushima, P. and Baltz, R.H. (1989a). Streptomyces /ipmanii expresses two restriction systems that inhibit transformation and bacteriophage plaque formation. J. Bacteriol. 171: 3128-3132.

Matsushima, P., McHenney, M.A. and Baltz, R.H. (1989b). Transduction and transduction and transformation of plasmid DNA in Streptomyces fradiae strains that express different levels of restriction. J. Bacteriol. 171: 3080-3084.

Mattern, I.E. and Bacq, C.M. (1963). Comparison de deux actinophages i.e. "host range" mutant 017/5 et Ia souche mere 017. Biochim. Biophys. Acta. 78: 221-223~

McCarthy, A.D., Hardie, D.G. (1984). Trends. Biochem. Sci. 9: 60.

McDaniel, R. et a/. and Ashley, G. (1999). Multiple genetic modifications of the erythromycin gene cluster to produce a library of novel 'unnatural' natural products. Proc. Nat/. Acad. Sci. USA. 98: 1846-1851.

McDaniel, R., Khosla, S.E., Hopwood, D.A., Khosla, C. (1993). Engineered biosynthesis of novel polyketides. Science 262: 1546-1550.

McHenney, M.A., Hosted, T.J., Dehoff, B.S., Rosteck, P.R. Jr. and Baltz, R.H. (1998). Molecular cloning and physical mapping of the deptomycin gene cluster from Streptomyces roseosporus. J. Bacteriol. 180: 143-151.

McHenry, C.S. and Crow, W. (1979). DNA polymerase lli of Escherichia coli. Purification and identification of subunits. J. Bioi. Chem. 254: 1748-1753.

Mediavilla, J. et a/. and Hatfull, G.F. (2000). Genome organization and characterization ofmycobacteriophage Bxbl. Mol. Microbiol. 38: 955-970.

Mehr, IJ., Seifert, H.S. (1998). Differential roles of homologous recombination pathways in Neisseria gonorrhoeae pilin antigenic variation, DNA transformation and DNA repair. Mol. Microbiol. 30: 697-710.

Merrick M.J. (1976). A morphological and genetic mapping study of bald colony mutants of Streptomyces coelico/or. J. Gen.Microbiol. 96: 299-315.

83

Page 12: BIBUOGRAPBY - shodhganga.inflibnet.ac.inshodhganga.inflibnet.ac.in/bitstream/10603/16040/... · Bibliography Burns, L.S., Smith, S.G.J. and Dorman, C.J. (2000). Interaction of FimB

Bibliography

Mertens, G., Hoffmann, A., Blocker, H., Frank, R. and Kahmann, R. (1984). Gin­mediated site-specific recomibation in bacteriophage Mu DNA: Over production ofthe protein and inversion in vitro. EMBOJ. 3:2405-2421

Meyer, T.M., Mlawer, N. and So, M. (1982). Pilus expression in .Neisseria gonorrhoeae involves chromosomal rearrangement. Cell. 30: 45-52.

Mitsuhiro, U., Masatomi, 1., Toru,M., Naoka, K., Hironobu, 1., Hiroshi, N., Masa, H., Masaaki, I. and Mitsuhiro, U., Masatomi, 1., Toni,M., Naoka, K., Hironobu, 1., Hiroshi, N., Masa, H., Masaaki, I. and Takeuchi, T. (1992). Dethymicin, A novel immunosuppresant isolated from an Amycolotopsis. J. antibiol. 45: 1819-1826.

Nanassy, O.Z., Hughes, K.T. (1998). In vivo identification of intermediate stages of the DNA inversion reaction catalyzed by Salmonella Hin recombinase. Genetics. 149: 1649-1663.

Niemi, J., Ylihonko, K., Hakala, J., Parssinen, R., Kopio, A. and Mantsala, P. (1994). Hybrid anthracycline antibiotics: Production of new anthracyclines by cloned genes from Streptomyces purpurascens in Streptomyces gali/aeus. Microbiology 140: 1351-1358.

Nodwell, J.R., McGovern, K. and Losick, R. (1996). An oligopeptide permease responsible for the import of an extracellular signal governing aerial mycelium formation in Streptomyces coelicolor. Mol. Microbiol. 22: 881-893.

Nossal, N.G. (1974). DNA synthesis on a double-stranded DNA template by the T4 bacteriophage DNA polymerase and the T4 gene 32 DNA unwinding protein. J. Bioi. Chern. 249: 5668-5676.

O'Donnell, M. (1987). Accessory proteins bind a primed template and mediate rapid cycling of DNA polymerase III holoenzyme from Escherichia coli. J. Bioi. Chern. 262: 16558-16565.

Oh, S.H. and Chater, K.F. (1997). Denaturat~on of circular or linear DNA facilitates targeted integrative transformation of Streptomyces coelico/or A3(2): possible relevance to other organisms. J. Bacteriol. 179: 122-127.

·O'Hagan, D.(1991). The polypeptide Metabolites; Ellis Horwood: Chichester.

Ohsako, S., Ohtomi, M., Sakamoto, X., Uyemura, K. and Deguchi, T. (1988). Arylamine N..,acetyltransferase from chicken liver II. Cloning of eDNA and expression in Chinese hamster ovary cells. J. Bioi. Chern. 263: 7534-7538.

Okanishi, M. Hamana, K. and Umezawa, H. (1968). Factors affecting infection of prootoplasts with deoxyribonucleic acid of actinophage PK-66. J. Virol. 2: 686-691.

Page 13: BIBUOGRAPBY - shodhganga.inflibnet.ac.inshodhganga.inflibnet.ac.in/bitstream/10603/16040/... · Bibliography Burns, L.S., Smith, S.G.J. and Dorman, C.J. (2000). Interaction of FimB

BlbUography

Olsen, E.R. and Chung, S. (1988). Transposon Tn4556 of Streptomyces fradiae: Nucleotide sequence ofthe ends and the target sites. J. Bacterial. 170: 1955-1957.

Olsen, P.B. and Klemm, P. (1994). Localization of promoters in thefim gene cluster arid the effect of H-NS on the transcription of fimB and fimE. FEMS Microbial. Lett. 116: 95-100.

Omura, S., Ikeda, H., Matsubara, H. and Sadakane, M. (1980). Hybrid biosynthesis and absolute configuration of macrolide antibiotic M-4565G 1. J. Antibiot. 33: 1570-1572.

Onrust, R., Finkelstein, J., Turner, J., Naktinis, V., Fang, L. and O'Donnell, M. (1995). Assembly of a chromosomal replication machine: two DNA polymerases, a clamp loader and sliding clamps in one holoenzyme particle Ill. Interface between two polymerases and the clamp loader. J. Bioi. Chern. 270: 13366-13377.

Oppenheim, B., Koornhof, H.J. and Austrian, R. ( 1986). Antibiotic-resistant pneumococcal disease in children at Baragwanath hospital, Johannesburg. Pediatr. Infoct. Dis. 5: 520-524.

Parker, A.P. and Dean, D.H. (1986). Temperate Bacillus bacteriophage SP16 genome -is circularly permuted and terminally redundent. J. Bacterial. 167: 719-721.

Patel, P.H. and Loeb, L.A. (2001). Getting a grip on how DNA polymerases function. Nature Structure Bioi. 8: 656-659.

Pelzer, S., SuBmuth, R., Heckmann, D., Recktenwald, J., Huber, P., Jung, G. and Wohlleben, W. ( 1999). Identification and analysis of balhimycin biosynthetic gene cluster its use for manipulating glycopeptide biosynthesis in Amyco/atopsis mediterranei DSM5908. Antimicrob. Agents Chemother. 43: 1565-1573.

Piperno, J.R., Alberts, B.M. (1978). An ATP stimulation of T4 DNA polymerase mediated via T4 gene 44/62 and 45 proteins. The requirement for ATP hydrolysis. J. Bioi. Chern. 253: 5174-5179.

Piperno, J.R., Kallen, R.G., Alberts, B.M. (1978). Analysis of the T4 DNA replication protein complex. Studies of the DNA recognition site for T4 gene 44/62 and 45 protein-catalyzed A TP hydrolysis. J. Bioi. Chern. 253: 5180-5185.

Plasterk, R.H.A. and Van de Putte, P.(1984). Genetic switches by DNA inversion in prokaryotes. Biochim. Biophys. Acta. 782: 111-l19.

Plasterk, R.H.A., Brinkman, A. and van de Putte, P. (1983). DNA inversions in the chromosome of Escherichia coli and in bacteriophage Mu: relationship to other site-specific recombination systems. Proc. Nat/. Acad. Sci. USA 80: 5355-5358.

85

Page 14: BIBUOGRAPBY - shodhganga.inflibnet.ac.inshodhganga.inflibnet.ac.in/bitstream/10603/16040/... · Bibliography Burns, L.S., Smith, S.G.J. and Dorman, C.J. (2000). Interaction of FimB

Bibliography

Plasterk, R.H.A., Ilmer, T.A.M. and van de Putte, P. (1984). A genetic switch in vitro: DNA inversion by gin protein of phage Mu. Proc. Nat!. Acad. Sci. USA 8.: 2689-2692.

Pope, M.K., Green, B. and, Westpheling, J. (1998). The bld B gene encodes a small p~tein required for morphogenesis, antibiotic production and catabolite control in Streptomyces coelicolor. J. Bacterial. 180: 1556-1562.

Ramsay, N. and Ritchie, D.A. (1980). A physical map ofthe permuted genome of bacteriophage Tl. Mol. Gen. Genet. 179: 669-675.

Ritsema, T. et a/. and Spanik, H.P. (1998). Functional analysis of an interspecies ch~era of acyl carrier proteins indicates a specialized domain for protein recpgnition. Mol. Gen. Genet. 257: 641-648.

Roberts, R.J. (1990). Restriction enzymes and their isoschizomers. Nucleic Acids. Res. 18: 2331-2365.

Rodicio, M.R. and Chater, K.F. (1988). The San (Sa/GI) restriction-modification sys~ms of Streptomyces a/bus G. Gene 74: 39-42.

Roesch, P.t. and Blomfield, l.C. (1998). Leucine alters the interaction ofthe leucine-' regUlatory protein (Lrp) with the fim switch to stimulate site-specific

recoPtbination in Escherichia coli. Mol. Microbial. 27: 751-761.

Roth, A.C., Nossal, N.G;, England, P.T. (1982). Rapid hydrolysis of deoxynucleoside triphosphates accompanies DNA synthesis by T4 DNA polymerase and T4 accessory proteins 44/62 and 45. J. Bioi. Chem. 257: 1267-1273.

Rozsa, F.W.1 Viollier, P., Fussenegger, M., Heistand-Nauer, R. and Arber, W. (1995). Cin-Ittediated recombination at secondary crossover sites on the Escherichia coli chromosome. J. Bacterial. 177: 1159-1168.

Ruan, X.R. ·. et a/. and Katz, L. (1997). Acyltransferase domain substitutions in erythromycin polyketide synthase yields novel eryrhtomycin derivatives. J. Bactetiol119: 6416-6425.

Rudenko, G., Cross, M. and Borst, P. (1998). Changing the end: antigenic variation orcheStrated at the telomeres of African trypanosomes. Trends Microbial. 6:

I

113-116. I •

Russel, M. ~d Model, P. (1986). The role of thioredoxin in filamentous phage asseml:)ly. Construction, isolation and characterization of mutant thioredoxins. · J. Bioi .. Chem. 261: 14997-15005.

Sambrook, J., Fritsch, E.F. and Maniatis, T. (1989). Molecular Cloning; A laboratory manual 2nd Edn., Cold Spring Harbor Laborary Press, N.Y.

86

Page 15: BIBUOGRAPBY - shodhganga.inflibnet.ac.inshodhganga.inflibnet.ac.in/bitstream/10603/16040/... · Bibliography Burns, L.S., Smith, S.G.J. and Dorman, C.J. (2000). Interaction of FimB

Bibliography

Sanger, ~F. , Nicklen, S. and Coulson, A.R. (1977). DNA sequencing with chain­. t~rminating inhibitors. Proc. Nat!. Acad Sci. USA 74: 5463.

Scherzerr, E., Auer, B. and Schweiger, M. (1987). Identification, purification and characterization of Escherichia coli virus T1 DNA methyltransferase. J. Bioi. Chern. 262: 15225-15231.

Schroedc::r, C., Jurkschat, H., Meisel, A., Reich, J.G. and Kruger, D. (1986). Unusual ~curance of EcoPI and EcoP15 recognition sites and counterselection oftype II methylation and restriction sequences in bacteriophage T7 DNA. Gene 45: 77-86.

Schupp, T., Toupet, C., Engel, N. and Goff, S. (1998). Cloning and sequence analysis of the putative rifamycin polypeptide synthase gene cluster from A'rnycolatopsis mediterranei. FEMS Microbiol. Lett. 159: 201-207.

Sensi, P.:and Thiemann, J.E. (1967). Production of rifamycin. Prog. Ind. Microbiol. 6: 21-60.

Sezonov, G., Blanc, V., Bamas-Jacques, N., Friedmann, A., Pernodet, J.L., Guerineau, M. (1997). Complete conversion of antibiotic ·precursor to pristinamycinll A by overexpression of Streptomyces pristinacspira/is biosynthetic genes. Nat. B~otechnol. 15: 349-353.

Sherman, D.H., Malpartida, F., Bibb, M.J., Keiser, H.M., Bibb, M.J. and Hopwood, D.A. (1989). Structure and deduced function of graniticin-producing polyketide synthase gene cluster of Streptomyces violaceoruber Tu22. EMBO J. 8: 2717-2725.

Sladkova,1, I.A. (1982). Circular permutation of DNA molecules of Streptomyces grlseus Kr actinophage Pg2. Mol. Bioi. (MOSK) 16: 98-103.

Smirnova; E.l. and Novikova, N.L. (1976). Intracellular growth of actinophage in Actinomyces lividans lysogenic for a heat-inducible mutant. Microbiologiya. 45~ 531-534.

Smith, M.C.M., Burns, R.N., Wilson, S.E. and Gregory, M.A. (1999). The complete genome sequence of the Streptomyces temperate phage 0C31 : evolutionary relationship to other viruses. Nucleic Acid,r Research. 27: 2145-2155.

Southern, :E.M. (1975). Detection of specific sequences among DNA fragments se~arated by gel electrophoresis. J. Mol. Bio/98: 503-517.

'

Spanier, J.G. and Cleary, P.P. (1983). A restriction map and analysis ofthe terminal redundancy in the Group A streptococcal bacteriophage SP24. Virology 130: 502-513.

Stellwag, E., Fink, J .M. and Zissler, J. (1985). Physical characterization of the genome of the Myxococcus xanthus bacteriophage MX-8. Mol. Gen. Genet. 199: 123-132.

87

Page 16: BIBUOGRAPBY - shodhganga.inflibnet.ac.inshodhganga.inflibnet.ac.in/bitstream/10603/16040/... · Bibliography Burns, L.S., Smith, S.G.J. and Dorman, C.J. (2000). Interaction of FimB

Bibliography

Sternberg, Maurer (1991). Bacteriophage mediated generalized transduction in E. coli and Salmonella typhimurium. Methods Enzymo/. 204: 18-43.

Stratmann, A., Toupet, C., Schilling, W., Traber, R., Oberer, L. and Schupp, T. (1999). ·. Intermediates of rifamycin polyketide synthase produced by an Amyco/atppsis mediterranei mutant with inactivated rifF gene. Microbiology 1145: 33()5-3375.

Stratmann, A., Toupet, C., Schilling, W., Traber, R., Oberer, L. and Schupp, T. (1999). Intermediates of rifamycin polypeptide synthase produced by an Amycolatopsis mediterranei mutant with inactivated rifF gene. Microbiology 145: 336S-3375.

Stuttard, C. (1979). Transduction of auxotrophic markers in the chloramphenicol producing strain of Streptomyces. J. Gen. Microbiol. 110: 479-482.

Suarez, J.E. and Chater, K.F.(1980). Polyethylene glycol-assisted transfection of Streptomyees protoplasts. J. Bacteriol. 142: 8-14.

Suss, F. and Klaus, S.(1981). Transduction in Streptomyces hygroscopicus mediated by the temperate bacteriophage SHl 0. Mol. Gen. Genet. 181: 552-555.

Szabo, C., Bisset, M.J. and Calvin, M. ( 1976). Inhibition of infectious rous sarcoma virus production by rifamycin derivative. J. Virol. 18: 445-453.

Tabor, S., Huber, H.E. and Richardson, C.C. (1987). Escherichia coli thioredoxin confers processivity on the DNA polymerase activity of the gene 5 protein of bacteriophage T7. J. Bioi. Chem. 262: 16212-16223.

Tang, L., Fu, H. and McDaniel, R. (2000). Formation of functional heterologous complexes · using subunits from the picromycin, erythromcyin and oleandomycin polyketide synthases. Chem. Bioi. 7: 77-84.

Tang, L., Fu, H., Betlach, M.C. and McDaniel, R. (1999). Elucidating the mechanism of chain termination switching in picromycin/methymycin polyketide synthase. Chem. Bioi. 6: 553-558.

Tang, L., Yoon, Y.J~, Choi, C.Y. and Hutchinson;C.R. (1998). Characterization ofthe enzymatic domains in the modular polypeptide synthase involved in rifamycinB biosynthesis by Amyco/atopsis mediterranei. Gene 216: 255-265.

Tang, L., Yoon, Y.J., Choi, C.Y., Hutchinson, C.R. (1998). Characterization of the enzymatic domains in the molecular polypeptide synthase involved in rifamycin B biosynthesis by Amycolatopsis medite"anei. Gene 216: 255-265.

Taylor, A.L. (1963).. Bacteriophage-induced mutation in E. coli. Proc. Nat/. Acad. Sci. USA. 50: 1043-1051.

88

Page 17: BIBUOGRAPBY - shodhganga.inflibnet.ac.inshodhganga.inflibnet.ac.in/bitstream/10603/16040/... · Bibliography Burns, L.S., Smith, S.G.J. and Dorman, C.J. (2000). Interaction of FimB

Bibliography

Tillet, D., Dittmann, E., Erhard, M., Dohren, H.V., Bomer, T. and Neilan, B.A. (2000). Structural organization of microcystin biosynthesis in Microcystic aerugfnosa PCC7806: an integrated peptide-polyketide synthetase system. Chem. Biol. 7: 753-764.

Tonegawa, S. (1983). Somatic generation of antibody diversity. Nature. 302: 575-581.

Tropf, S., Revill, W.P., Bibb, M.J., Hopwood, D.A. and Schweizer, M. (1998). Heterologously expressed aceyl carrier protein domain of rat fatty acid synthase functions in Escherichia coli fatty acid synthase and Streptomyce coelicolor polyketide synthase systems. Chem. Bio/5: 135-146.

Trygve, B., Sekurova, O.N., Sletta, H., Ellingsen, T.E., Strom, A.R., Valla, S. and Zotchev, S.B. (2000). Biosynthesis of polyene antifungal antibiotic nystatin in Streptomyces noursei ATCC 11455: analysis of the gene cluster and deduction of the biosynthetic pathway. Chern. Biol. 7: 395-403.

van de Putte, P., Cramer, S. and Giphart-Gassler, M. (1980). Invertible DNA determines host specificity ofbacteriophage Mu. Nature 286: 218-222.

Volff, J.N. and Allenbuchner, J. (1997). High frequency transposition of the Tn5 derivative in Tn5493 in Streptomyces lividans. Gene 194: 81-86.

Waldron, C. et al. and Baltz, R.H. (2001). Cloning and analysis of the spinosad biosynthetic gene cluster of Saccharopolyspora spinosa. Chem. Bioi. 8: 487-499.

Wang, J., Sattar, A.K., Wang, C.C., Karam, J.D., Konigsberg, W.H. and Steitg, T.A. (1997). Crystal structure of a pol alpha family replication DNA polymerase from bact~riophage RB69. Cell89: 1087-1099.

Wang, N.J., Han, B.L., Yameshita, N. and Sato, M. (1994). 31-Homorifamycin W, a novel metabolite from Amycolatopsis mediterranei. J. Antibiot. 47: 613-615.

Weber, J.M., Leung, J.C., Swanson, S.J., Idler, K.B., McAlpine, J.B. (1991). An erythromy~in derivative produced by targeted gene disruption in Saccharo[lplyspora erythraea. Science 252: 114-117.

Wehrli, W. (1977). Ansamysins: Chemistry, biosynthesis and biological activity. Topics Currr. Chem. 72: 21-49.

Wilkinson, B. et ol. and Staunton, J. {2000). Novel actaketide macrolides related to 6-deoxyerythronolide B provide evidence for iterative operation of erythromycin polyketide synthase. Chern. Bioi. 7: 111-117.

Wilson, G.G. and Murray, N.E. {1991). Restriction and modification systems. Annu. Rev. Genet. 25: 585-627.

89

Page 18: BIBUOGRAPBY - shodhganga.inflibnet.ac.inshodhganga.inflibnet.ac.in/bitstream/10603/16040/... · Bibliography Burns, L.S., Smith, S.G.J. and Dorman, C.J. (2000). Interaction of FimB

Bibliography

Xue, Y. and Sherman, D.H. (2000). Alternative modular polyketide synthase expressio~ controls macrolactone structure. Nature. 403: 571-575.

Xue, Y ., Zhao, L., Liu, H. W. and Shennan, D .H. ( 1998). A gene cluster for macrolide antibiotic biosynthesis in Streptomyces venezue/ae: Architecture of metabolic diversity. froc. Nat/. Acad. Sci. USA 95: 12111-12116.

Yamamoto, K.R., 1Alberts, B.M., Benzinger, R., Lawhorne, L. and Treiber, G. (1970). Rapid bac~riophage sedimentation in the presence of polyethyleneglycol and its application to lage-scale virus purification. Virology 40: 734-744.

Yu, T.W., Bibb, M.J., Revill, W.P. and Hopwood, D.A. (1994). Cloning, sequencing and analySis of the griseusin polyketide synthase gene cluster from Streptomyces griseus. J Bacterio/. 176: 2627-2634.

Yu, T.W., Muller, R., Muller, M., Zhang, X., Draeger, G., Kim, C.G., Leistner, E. and Floss, H.G. (2001). Mutational analysis and reconstituted expression of the biosynthetic .genes inovolved in the formation of 3-amino-5-hydroxybenzoic acid the ~er unit of rifamycin biosynthesis in Amycolatopsis medite"anei$;699. J Bioi. Chem. 276: 12546-12555.

Zieg, J., Hilmen, M. and Simon, M. (1978). Regulation of gene expression by site­specific inver$ion. Cell. 15: 237-244.

Zimmerli, W., Widmer, A.F., Blatter, M., Frei, R. and Ochsener, P.E. (1998). Role of rifampin for tt:eatment of orthopedic implant related staphylococcal infections of a randomized controlled trial. JAm. Med. Assoc. 219: 1537-1541.

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