bio105k tutoring thursdays 1:00 – 2:00 in the fish bowl = room 153 science building sam giles

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BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles

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Page 1: BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles

BIO105K tutoring Thursdays 1:00 – 2:00in the Fish Bowl = room 153 Science BuildingSam Giles

Page 2: BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles

Day Date Subject To be read prior to this class period: M 1/14 no class - Snow Day!W 1/16 Evolution: Unity and Diversity Chapter 1

M 1/21 no class – Rev. Martin Luther King, Jr. DayW 1/23 Water and the Chemical Environment Chapter 2 (except pp30-35)

M 1/28 Quiz #1 on Ch. 1 and parts of Ch. 2 and related lectures/handouts(no make ups for missed quiz)Cell Membranes Chapter 6

W 1/30 Macromolecules Chapter 3 (except pp63-69)M 2/4 Macromolecules

W 2/6 Quiz #2 on Ch. 3 and 6 and related lectures/handouts(no make ups for missed quiz)The Cell Chapter 7

M 2/11 BioenergeticsW 2/13 Cell Respiration Chapter 9M 2/18 no class - Winter BreakW 2/20 no class - Winter BreakM 2/25 EXAM I Chapters 1, 6,7, parts of 2, 3

Page 3: BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles
Page 4: BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles

Aquaporin protein makes a water channel through the cell (plasma) membrane.

Page 5: BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles

The function of Aquaporin is to allow the passive diffusion of water across the cell membrane. The structure ofAquaporin is a donut and water goesthrough the donut hole.

Aquaporin increases the rate ofosmosis.

Page 6: BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles
Page 7: BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles

Chapter 3 is about protein structure and function.

In Chapter 3, the material on pages 63 -69 is not really covered until after the first test. That means you need to read it now but you don’t need to study it until after the first test. Also, I will talk about this material in class but not until after the first test.

The example will we use is the protein Aquaporin.

Page 8: BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles

Major Sites of Expression and Function of Human AquaporinAquaporin-0 Eye: lens fiber cells Fluid balance within the lensAquaporin-1 Red blood cells Osmotic protection

Kidney: proximal tubule Concentration of urine Eye: ciliary epithelium Production of aqueous humor Brain: choriod plexus Production of cerebrospinal fluid Lung: alveolar epithelial cells Alveolar hydration state

Aquaporin-2 Kidney: collecting ducts Mediates antidiuretic hormone activityAquaporin-3 Kidney: collecting ducts Reabsorbtion of water into blood

Trachea: epithelial cells Secretion of water into tracheaAquaporin-4 Kidney: collecting ducts Reabsorbtion of water

Brain: ependymal cells CSF fluid balance Brain: hypothalamus Osmosensing function? Lung: bronchial epithelium Bronchial fluid secretion

Aquaporin-5 Salivary glands Production of saliva Lacrimal glands Production of tears

Aquaporin-6 Kidney Very low water permiability; function?Aquaporin-7 Testis and spermAquaporin-8 Testis, pancreas, liver, othersAquaporin-9 Leukocytes

Page 9: BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles
Page 10: BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles
Page 11: BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles
Page 12: BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles
Page 13: BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles
Page 14: BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles
Page 15: BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles
Page 16: BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles
Page 17: BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles
Page 18: BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles
Page 19: BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles
Page 20: BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles
Page 21: BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles

Aquaporin creates a channelthrough the cell membrane that onlylets H Othrough.

2

Page 22: BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles
Page 23: BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles
Page 24: BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles
Page 25: BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles
Page 26: BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles
Page 27: BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles
Page 28: BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles
Page 29: BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles
Page 30: BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles

Some examples of endocytosis and exocytosis:

1) Aquaporin-2 in human kidney cells 2) neurotransmitter vesicles in all human nerve cells3) phagocytosis of bacteria by human white blood cells4) receptor-mediated endocytosis and cholesterol traffic in humans

membrane traffic in cells

Page 31: BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles

Some examples of endocytosis and exocytosis:

1) Aquaporin-2 in human kidney cells 2) neurotransmitter vesicles in all human nerve cells3) phagocytosis of bacteria by human white blood cells4) receptor-mediated endocytosis and cholesterol traffic in humans

membrane traffic in cells

Page 32: BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles
Page 33: BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles
Page 34: BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles

Some examples of endocytosis and exocytosis:

1) Aquaporin-2 in human kidney cells 2) neurotransmitter vesicles in all human nerve cells3) phagocytosis of bacteria by human white blood cells4) receptor-mediated endocytosis and cholesterol traffic in humans

membrane traffic in cells

Page 35: BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles
Page 36: BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles
Page 37: BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles
Page 38: BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles
Page 39: BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles

Some examples of endocytosis and exocytosis:

1) Aquaporin-2 in human kidney cells 2) neurotransmitter vesicles in all human nerve cells3) phagocytosis of bacteria by human white blood cells4) receptor-mediated endocytosis and cholesterol traffic in humans

membrane traffic in cells

Page 40: BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles
Page 41: BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles
Page 42: BIO105K tutoring Thursdays 1:00 – 2:00 in the Fish Bowl = room 153 Science Building Sam Giles

Low-density lipoprotein (LDL) belongs to the lipoprotein particle family. Diameter is about 22 nm, Mass is about 3 million Daltons (one Hydrogen atom = 1 Dalton)But vary in size (A few large LDL are healthier than many small LDL.)Each LDL contain:1) one B-100 protein molecule (It’s big: 4536 amino acid residues) B-100 binds to the LDL receptor on cells.2) a highly-hydrophobic core consisting of linoleate, a fatty acid, and about 1500 cholestrol molecules3) surrounded by a shell of phospholipids