biomechanical simulation using supercomputer for predictive medicine
DESCRIPTION
Author: Takagi, S. Presentation for the Biomedical & Mechatronics Workshop Forum UTokyo USP, 2013TRANSCRIPT
Biomechanical Simulation using Supercomputer for Predictive Medicine
Shu TAKAGIDepartment of Mechanical Engineering & Department of Bioengineering
The University of Tokyo
K. Sugiyama (RIKEN), S. Ii (Osaka Univ.), K. Okita (Nihon Univ.) , T. Azuma ( Univ. Tokyo), Y. Matsumoto ( Univ. Tokyo )
“K (京)” computer in Kobe
10P (=1016) operations/sec= 8×104 (nodes) × 8 (cores) × 8 (operations) × 2×109 (Hz)
multi-level parallelismhttp://jp.fujitsu.com/solutions/hpc/brochures
http://www.fujitsu.com/global/about/tech/k/
10 Peta Flops with 640,000 cores
For the Design and Developmentof High Intensity Focused Ultrasound
Therapy (HIFU) Device
High Intensity Focused Ultrasound therapy
http://www.prostatecancercentre.co.uk/treatments/hifu.html
•Prostate cancer•Breast cancer
Brain cancer Liver cancer
HIFU therapy has been developed for the treatment of deeply-placed cancer.
Control of the focal point by an array transducer
http://www.imasonic.com/
Displacement of focal point due to the reflection and refraction of ultrasound at the interfaces of bones
HIFU simulator
Comparison of the focal point
With phase delay
0 2Pressure [MPa]
Pmax=2.2MPa
Without phase delay
0 2Pressure [MPa]
Pmax=1.7MPa
Numerical MethodSuitable for Medical Image Data(Full Eulerian FSI simulations)
Gaehtgens et al.(1980) Blood Cells., 6, 799.
Fluid-Structure coupling analysis of living body
(Finite-Difference or Finite-Element) Simulation
on Eulerian frame
Diagnostic image (CT, MRI)
Voxel data (Volume Fraction of Constituents)representing multi-component geometry
without Mesh Generation
Background
by left Cauchy-Greendeformation tensor
EulerianLagrangianHow is the two-phase distinguished ?
by the boundary of mesh by solid volume fractionHow is the solid deformation described?
by the displacement of material points themselves
・ Sugiyama, Ii et al. (2011) J. Comput . Phys., 230, 596.・ Ii, Sugiyama et al. (2011) Int. J. Numer. Meth. Fluids, 65, 150.
vs.
Full Eulerian approach for Fluid-Structure Interactions
s1
00.5
FluidSolid
FluidSolid
The Super-Fast FSI Solver: ZZ-EFSI
ZZ-EFSI achieved the actual speed of 4.5 PETA FLOPS!!!
Software availablle athttp://www.islim.org/islim-dl_e.html
Development of MultiscaleThrombosis Simulator
Blood flow(continuum mechanics)
Protein(wWF)-Protein (GP1b) binding(stochastic process)
Molecular interaction(molecular dynamics)
Multiscale modeling of initial stage of thromobosis
•Substance diffusion•Metabolic reaction and activation•Morphology change
Ht = 5.5 % Ht = 15.3 % Ht = 21.9 %
Adhesion of Platelets in a Shear Flow t 200 (ms) = 800 (s-1)
Tokai University: S. Goto, S. Shiozaki, N.TamuraRIKEN: S. Noda, H. Yokota, R. HimenoOsaka University: S. TakeuchiShanghai Jiaotong University: X. Gong, F. LiangPeking University: J. WuYork University: H. Huang
Acknowledgement
References: ・ Sugiyama, el al, J. Comput. Phys., Vol.230 (2010), pp.596-627.・ Takagi et al. J. Appl. Mech. Vol.79 (2011), 010911.・ Ii et al., Int. J. Numerical Method. in Fluids, Vol.65 (2011). pp.43-66.・ Ii et al., Comm. in Cmuput. Phys, Vol.12 (2013), pp.544-576.・ Shiozaki et al. JBSE, Vol.7 (2012), pp.275-283.・ Ii et al., J.Comput Phys, , Vol.231 (2012), pp.2328-2358.