casp14: critical assessment of structure prediction...protein structure refinement protein...
TRANSCRIPT
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Advancing solutions to the Protein Folding Problem
• Rigor• Transparency• Collaboration• Communication
CASP14: Critical Assessment of Structure Prediction
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CASP Requirements
• Many Targets.• Each Participant makes many predictions.• Many Participants.• Gold standard• Head-to-head methods comparison• Clear Metrics• Authoritative evaluation.
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Jan Pedersen Tim Hubbard Steve Bryant Burkhard Rost
Founders and Organizers
Maya TopfKrzysztof Fidelis Andriy Kryshtafovych Torsten Schwede
Anna Tramontano
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CASP14 ASSESSORS• Topology Nick Grishin, Lisa Kinch• High accuracy modeling Andrie Lupus, Joana Pereira, Marcus Harman
• Refinement Dan Rigden• Contacts Alfonso Valencia, Rosalba Lepore
• Accuracy estimation Chaok Seok • Assemblies Ezgi Karaca
• CAPRI Marc Lesink, Shoshana Wodak• Function Sandor Vadja, Dima Kozakov
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How this meeting (should) work
• Main zoom sessions• Main interface – posters links, How to, link to Airmeet• Airmeet lounge – help, informal meetings, poster
sessions.• DISCORD channels• Extra sessions • Ongoing interest groups
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Protein structureRefinement
Protein AssembliesContacts and Distances
Accuracy Estimation Deriving functionCovid and CASP
The future of deep learning
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CASPPunctuatedEquilibrium
Pre-CASP
PSIBLAST/HMM
Servers
Consensus
Fragments
Multi-Template
Refinement
Accuracy estimates
Contacts
Deep Learning
No crystallography
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‘So, either this group is close to solving the folding problem or they cheated somehow.’
Nick Grishin
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David Koes, CASP13
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Not an end, but a Beginning: The door is open to?:
• Protein complexes• Accuracy estimation• Protein design• Protein dynamics• Protein conformational change• Preferred conformations of disordered proteins• Mutation interpretation• Ligand docking