chem 109 c bioorganic compounds - department …...course outline part 7: bioorganic compounds!...
TRANSCRIPT
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Fall 2019HFH1104
Armen ZakarianOffice: Chemistry Bldn 2217
Chem 109 CBioorganic Compounds
http://labs.chem.ucsb.edu/~zakariangroup/courses.html
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syllabus
! Textbook: “Organic Chemistry” 8th edition by P. Y. Bruiceand [Solutions Manual and Study Guide]
! website:
http://labs.chem.ucsb.edu/~zakariangroup/courses.html
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syllabus
! email - [email protected]
make sure to include Subject: 109C
! Office Hours
Mon, Wed - 2:00-2:45 pm (or email)
Chemistry building, room 2217
! website:
http://labs.chem.ucsb.edu/~zakariangroup/courses.html
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grading
! 3 midterms + final
! 500 points total
! three midterm exams: 100 points each lowest scoring is dropped
! a 300 point final exam
" A 85-100%" B 75-84.9%" C 60-74.9%" D 45-59.9%
no make ups for any tests
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tests
! all exams will be in this room, HFH1104
! ALL electronic devices must remain stowed away during exams
! Bring a picture ID to the exam
! No makeups – a missed test will be the dropped test
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tests
! Alltestswillbea~50:50mixofmultiplechoiceandregularquestionsby
points
≈ 50 : 50
Midterms: non-cumulative 24 questions total 16 multiple choice, 8 regular
Final test: cumulative, 60 questions, 40 multiple choice, 20 regular
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holidays - no class
! Thanksgiving Wednesday, 11/27-29
! Veteran’s day Wednesday, 11/11
! Other days
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formula for success:
• read the textbook before coming to class
• come to class
• do the suggested problems
• do the suggested problems again
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course outline Part 7: Bioorganic Compounds
! Chapter 20 – Carbohydrates ! Chapter 21 – Amino Acids, Peptides, and Proteins ! Chapter 22 – Catalysis and Enzymes ! Chapter 23 – The Organic Chemistry of the Coenzymes ! Chapter 24 – The Organic Chemistry of the Metabolic Pathways ! Chapter 25 – The Organic Chemistry of the Lipids ! Chapter 26 – The Chemistry of Nucleic Acids
! Chapter 27: optional reading - Synthetic Polymers
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• carbohydrates, sugars, saccharides>50% of all biomass
• lipidsfats/oilsterpenessteroids, etc.
• amino acids, peptides, proteins
• nucleotides, nucleosides, RNA, DNA
Biomolecules O
HOHO
HO
OH
OHD-glucose
N
N NH
N
purine
NH3+
O
O-
L-alanine
O
O
O
O
OO
butter
HO
H
H H
cholesterol
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Synthetic (man-made) Compounds:
• polymers (plastics):
• pharmaceuticals
N
O
H
NH
O
N
O
H
O
N
O
H
NH
O
N
O
H
N
O
H
KEVLAR
Ph
etc
Phetc
Ph Ph
polystyrene
N
SHN
OO
CO2Hpenicillin
NHCH3
ClCl
Zoloft
O
OH
O
O
aspirin
O
HO
HOH
N
morphine
N
OHO
HO
O
naloxone/NARCAN
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Review of Stereochemistry
• Organic chemistry - chemistry of carbon, C
• Valence number: 4
C C C
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Review of Stereochemistry
C
CHO
HOH2C OHH
D-glyceraldehyde
C
CHO
CH2OHHOH
L-glyceraldehyde
C
CHO
HOH2C HH C
CHO
CH2OHHH
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CHAPTER 20
THE ORGANIC CHEMISTRY OF
CARBOHYDRATES
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Carbohydrates: Introduction extremely widespread in biosphere, >50% of all biomass
! main functions: 1) source of energy
2) cell-cell communication, recognition
! origin of name: “carbo” (C) + “hydrates” (H2O) = Cn(H2O)n = CnH2nOn
! main source: photosynthesis in plants
photosynthesis process:
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Carbohydrates: Introduction
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Carbohydrates: Classification
monosaccharides (simple carbohydrates)
oligosaccharides: 3 to 10 units
polysaccharides: >10 units
disaccharides
based on number of single carbohydrate units
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Carbohydrates: Classification
aldoseshave aldehyde group
ketoseshave ketone group
based on carbonyl group
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Carbohydrates: Classification based on # of carbons in chain
O
H OH
OHH
OH
O
HO H
H OH
OHH
OH
H OH
HO H
H OH
O
OHH
OH
D-glucose D-arabinose D-erythrose
a hexose
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Carbohydrates: Classification The D and L notation
H OH
HO H
H OH
O
OHH
OH
HO H
H OH
O
HO H
HO H
OH
D-glucose L-glucose
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Carbohydrates: Classification The D and L notation
H OH
HO H
H OH
O
OHH
OH
HO H
H OH
O
HO H
HO H
OH
OHHO
OHHO H
O
OH
D-glyceraldehyde L-glyceraldehyde
D-glucose L-glucose
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Carbohydrates: Classification PROBLEM 1 (modified)Classify the following monosaccharides
arabinose
HHOHO H
OH
OHO
H
OHHH OH
OH
HH
HOHO
O
OHHH OH
OH
HOH
HOH
OOH
mannosesedoheptulose
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Carbohydrates: Epimers epimers: diastereomers that differ in configuration at only one asymmetric center
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Carbohydrates: Configurations of Aldoses
Number of stereoisomers = 2n n is number of stereocenters
H OH
HO H
H OH
O
OHH
OH
D-glucose
total number of stereoisomers for aldohexoses?
total number of stereoisomers for D-aldohexoses?
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Carbohydrates: Configurations of Aldoses
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Carbohydrates: Configurations of Aldoses Rebuilding Table 21.1 (p. 982)
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Carbohydrates: Configurations of Ketoses
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Carbohydrates: Epimers PROBLEM 8 (modified)How many stereoisomers are possible for
a. 2-ketohexose
b. an aldoheptose
c. a ketotriose