classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · monera protista...

47
Announcements: 1. Labs meet this week 2. Lab manuals have been ordered 3. Some slides from each lecture will be on the web 4. Study questions will be posted after each lecture

Upload: others

Post on 19-Oct-2020

10 views

Category:

Documents


0 download

TRANSCRIPT

Page 1: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

Announcements:

1. Labs meet this week

2. Lab manuals have been ordered

3. Some slides from each lecture will be on the web

4. Study questions will be posted after each lecture

Page 2: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

Monera AnimaliaFungiPlantaeProtista

Prokaryotes Eukaryotes

MetazoaProtozoa

HeterotrophicAutotrophic

Absorptive Ingest/digest

Page 3: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

What is an Animal ?

1. Animals are multicellular, heterotrophic, eukaryotes that ingest and digest their food.

2. Animals lack a cell wall.

3. Are capable of moving (during some point in their lives).

4. All animals have regulatory genes called Hox genes.

Page 4: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

•To date > 1.5 million species of animals have been described by biologists

• ~ 10, 000 new species are described each year

•Estimates of the total number of animal species are around 10 million.

Page 5: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

What is a Species?

Species Concepts:

1. Typological species concept: species are distinct, unchanging entities defined by unique, morphological features. This concept has been abandoned by biologists.

Page 6: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

It ignores evolution: species are not “unchanging entities”

Some Problems with the Typological Species Concept

1. Artificial selection: artificial selection for oil content in corn

High oil

Low oil

Page 7: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

Natural selection: Trinidadian guppies

Page 8: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

Sexual Dimorphism: the sexes differ morphologically

Some Problems with the Typological Species Concept

Sailfin molly

femalemale

Page 9: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

Alternative morphs:

e.g. horn polymorphisms in beetles

Some Problems with the Typological Species Concept

Hornlessmorph

Hornedmorph

Page 10: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

Cline: a change in in morphology along an environmental gradient

Some Problems with the Typological Species Concept

Size in yarrow

Page 11: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

Some Problems with the Typological Species Concept

Latitude

Drosophila subobscura

Page 12: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

Cryptic species: some species are similar morphologically but differ in other important ways

Some Problems with the Typological Species Concept

Western meadowlark

Eastern meadowlark

Page 13: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

What is a species?

Species Concepts:

2. Biological species concept: a species is a population or group of populations that can potentially interbreed and produce viable,fertile offspring, but that is reproductively isolated from other populations.

Page 14: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

There is tremendous morphological variation within Homo sapiens. But all humans can potentially interbreed.

In contrast, some species are very similar morphologically but can not interbreed…

Page 15: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

Western meadowlark Eastern meadowlark

Page 16: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

Mechanisms of reproductive isolation:

1. Prezygotic barriers: prevent mating or fertilization

•Behavioral

Page 17: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

Western meadowlark Eastern meadowlark

Page 18: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

Mechanisms of reproductive isolation:

1. Prezygotic barriers: prevent mating or fertilization

•Behavioral

•Temporal

Page 19: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

Western spotted skunk: summer breeder

Eastern spotted skunk: winter breeder

Page 20: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

Mechanisms of reproductive isolation:

1. Prezygotic barriers: prevent mating or fertilization

•Behavioral

•Temporal

•Habitat isolation

Page 21: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

Aquatic garter snake Terrestrial garter snake

Page 22: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

Mechanisms of reproductive isolation:

1. Prezygotic barriers: prevent mating or fertilization

2. Postzygotic barriers: prevent hybrid from developing into a viable, fertile adult

Page 23: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

Some problems with the biological species concept:

1. It is hard to apply especially to fossil data.

2. Species exist in time and space: the biological species concept has no time component.

3. What do we do with asexual organisms?

Page 24: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

•Bdelloid Rotifers haven’t reproduced sexually for > 80 million years- each individual is reproductively isolated !

•An estimated 2000 species are completely asexual.

Page 25: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

Species Concepts:

1. Typological species concept

2. Biological species concept

3. Evolutionary species concept• Incorporates time

4. Ecological species concept• Incoporates niche

5. Phylogenetic species concept• Incorporates unique, evolved traits

These have all been proposed to solve some of the problems of the other concepts

Page 26: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

•To date > 1.5 million species of animals have been described by biologists

• ~ 10, 000 new species are described each year

•Estimates of the total number of animal species are around 10 million.

•How do biologists organize all of this diversity?

Page 27: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

Classification and Phylogeny of Animals

•Taxonomy: the branch of biology that deals with the systematic classification and naming of species (or groups of species) (long pre-Darwinian history).

Page 28: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

Carolus Linnaeus (1707- 1778)

•Swedish botanist

•Systema Naturae: a classification scheme that used morphology to group organisms into hierarchical categories

Taxonomy

Page 29: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

Linnaean Classification

Kingdom

Phylum

Class

Order

Family

Genus

species

•In this scheme the major categories are called taxa

•Higher taxa are increasingly inclusive

•Each species is given a unique binomial name: Binomial nomenclature

Taxonomy

Page 30: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

Linnaean Classification: an example

Kingdom: Animalia

Phylum: Chordata

Class: Aves

Order: Piciformes

Family: Picidae

Genus: Melanerpes

species: carolinus

Taxonomy

Page 31: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

Linnaean Classification: another example

Kingdom: Animalia

Phylum: Chordata

Class: Aves

Order: Piciformes

Family: Picidae

Genus: Melanerpes

species: erythrocephalus

Taxonomy

Page 32: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

Linnaean Classification: another example

Kingdom: Animalia

Phylum: Chordata

Class: Aves

Order: Piciformes

Family: Ramphastidae

Genus: Ramphastos

species: sulfuratus

Taxonomy

Keeled toucan

Page 33: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

Linnaean Classification Kingdom: Animalia

Phylum: Chordata

Subphylum: Vertebrata

Class: Mammalia

Subclass: Eutheria

Order: Primates

Suborder: Anthropoidea

Family: Pongidae

Subfamily: ~

Genus: Gorilla

species: gorilla

Taxonomy

Page 34: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

Classification and Phylogeny of Animals

•Taxonomy: the branch of biology that deals with the systematic classification and naming of species (or groups of species) (long pre-Darwinian history).

•Systematics: the branch of biology that seeks to understand the evolutionary relationships between groups of organisms (post-Darwinian).

-One of the major goals of systematics is the construction of phylogenies

Page 35: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

Systematics

Phylogeny: an evolutionary tree that depicts the relationships between living and extinct species (or higher taxonomic groups)

A CB D

Most recent common ancestor of C and D

Most recent common ancestor of A and B

Most recent common ancestor of A, B, C and D

Page 36: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

What kind of information is used to construct phylogenies?

•Characters: organismal features that vary among species (morphological or molecular characteristics)

Systematics

Page 37: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

Morphological characters used to construct phylogenies-

•Levels of organization:

1. Cellular level: an aggregation of cells that are functionally differentiated, but that are not organized into tissues

2. Tissue level: cells are organized into tissues that have a specific function

3. Organ level: tissues are aggregated into organs that have specialized functions

Page 38: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

spongesjellyfish, corals, etc.

other animals

cellularlevel

tissue level

organ level

Page 39: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

Morphological characters used to construct phylogenies

•Type of symmetry: the arrangement of body structures relative to some axis of the body

1. Asymmetrical:

2. Radial symmetry:

3. Bilateral symmetry:

Page 40: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

Asymmetrical

Bilateral

Radial

No plane can divide the body into two symmetrical halves

> 1 plane can divide the body into two symmetrical halves

1 plane divides the body into two symmetrical halves

Page 41: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

sponges

jellyfish, corals, etc.

other animals

asymmetrical

radial symmetry

bilateral symmetry

Page 42: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

Characters used to construct phylogenies

•The presence of different body structures

•Developmental patterns

•Molecular data: DNA / RNA sequence data

Page 43: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

What kind of information is used to establish these relationships?

•Characters: organismal features that vary among species (morphological or molecular characteristics)

•Homologous characters: characters that are similar to one another due to shared ancestry (not necessarily shared function)

Page 44: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

Examples of homologous characters: Vertebrate forelimbs

Page 45: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

•Analogous characters: characters that are similar to one another in function, but not ancestry.

•Analogous characters are not useful in determining the evolutionary relationships between organisms.

Page 46: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

Examples of analogous characters: bat wings and insect wings

Bat wing Fly wing

Page 47: classifiaction and phylogeny 1-11-05bsc2011l/sp_05_doc/classifiaction_and... · Monera Protista Plantae Fungi Animalia Prokaryotes Eukaryotes Protozoa Metazoa Autotrophic Heterotrophic

Classification and Phylogeny of Animals

•Taxonomy: the branch of biology that deals with the systematic classification and naming of species (or groups of species) (long pre-Darwinian history).

•Systematics: the branch of biology that seeks to understand the evolutionary relationships between groups of organisms (post-Darwinian).