curves in epidemiology: an overview
TRANSCRIPT
Curves in epidemiologyLife path is full of Curves thus the Epidemiology too.
Dr. Bhoj R SinghAct. Head of Division of Epidemiology
Indian Veterinary Research Institute, Izatnagar-243122, IndiaEmail: [email protected]
Curves• Depiction of frequency distribution in
graphical format is a curve.
Characteristics of frequency distribution:• Central value (most common: the arithmetic
mean, the median, and the mode. Rare: the midrange and the geometric mean)
• Variance (the range, variance, and the standard deviation)
• Shape (Symmetric, Skewed)
B=Symmetrical, normal; A= Positively skewed, skewed to right; C= Skewed to left, negatively skewed
Types of Curves
• Epidemic curves• Survival curves
• Cumulative frequency (incidence curves)• Distribution curves
Epidemic curve
• An epidemic curve isn’t a curve at all, but a histogram that shows cases of disease during a disease outbreak or epidemic by their date of onset.
• the number of cases on the vertical axis and time on the horizontal axis (The duration of the epidemic is shown along the x-axis in equal time periods).
Epidemic (outbreak) and Hypodemic (sudden banishment of a disease from a
population)
The X axis
• Time line• Intervals are decided on the basis of incubation period
and length of illness.• Hours for an outbreak of C. perfringens gastroenteritis,
or 3-5 days for an outbreak of hepatitis A. As a general rule, we make the intervals less than one-fourth of the incubation period of the disease shown. The x axis begins before the first case of the outbreak, and show any cases of the same disease which occurred during the pre-epidemic period. These cases may represent background or unrelated cases.
Cumulative frequency/ survival curves
Interpreting the Epidemic curve• An epidemic curve which has a steep upslope and a more gradual
down slope (a log-normal curve) indicates a point source epidemic in which susceptible are exposed to the same source over a relative brief period. In fact, any sudden rise in the number of cases suggests sudden exposure to a common source. In a point source epidemic, all the cases occur within one incubation period.
• If the duration of exposure is prolonged, the epidemic is called a continuous common source epidemic, and the epidemic curve will have a plateau instead of a peak.
• Intermittent common source epidemics produce irregularly jagged epidemic curves which reflect the intermittency and duration of exposure, and the number of individuals exposed.
• Animal to animal spread – a propagated epidemic – should have a series of progressively taller peaks one incubation period apart, but in reality few produce this classic pattern.
Point source
0
5
10
15
20
No of cases
Time
Duration ~ Incubation time
Continous source
Mean IP
0
5
10
15
20
1 4 7 10 13 16 19 22 25 28 31 34 37
No of cases
Weeks
Is it Continuous source Outbreak?
Intermittent sourceNo of cases
Time (days)
0
1
2
3
4
5
6
7
8
9
10
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22
Propagated epidemic Animal-to-Animal transmission
0
5
10
Zeit
No of cases
Generation
time
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22
Is it propagated outbreak?
Middle East respiratory syndrome corona virus
Probable exposure time
0
5
10
15
Time
1 Median onset time
23
50% 50%Probable exposure time
Median incubation time: Intervall between first and last disease onsetNo of cases
1 2 3 4 5 6 7 8 9 10 11 12 1314 15 16 17 18 19 20 21 22
Probable exposure period
1 3 5 7 9 11 13 15 17 19 21 23 25 27 29 31 TimeProbable exposure period
minimum incubation time
Maximum incubation time
No of cases
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22
Two ways of making epicurves in Excel
• The ”square method”– Turn a work sheet in to squares– Fill in each patient as a square
• The ”chart method”– Make a table of onset times– Use the chart wizard– Make a histogram (by removing intervals between
bars in a bar chart)
Applications of epidemic curves• Time components of an outbreak• Shows
– Start – End – Duration – Peak– Outliers
• Help to frame hypothèses on– Route of transmission– Probable exposure period– Iincubation time
• Refining the estimate of the point in time of occurrence of a focal point source
• Identifying multiple possible sources of exposure• Distinguishing primary and secondary cases• Unmasking outbreak source through epidemic curve segmentation