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Physical Stream Habitat
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What is “Habitat”?
Broad Definition (EPA):
“The spatial structure of the environment which allows species to live, reproduce, feed and move”
In Relation to Streams (USGS):
“The physical and chemical characteristics of a stream that determine suitability for habitation and reproduction of stream organisms”
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What is “Physical Habitat”?
“The template of water depth, water velocity, substrate, cover and temperature that supports the stream ecosystem” – USGS
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Stream Morphology
Aquatic Community
Physical Habitat
Chemical HabitatInterspecies Interactions
Land Use Vegetation
HydrologicConditions
GeologyTopography
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Measurable Characteristics of Physical Habitat
• Channel morphology / type
• Flow regime
• Sediment texture / mobility
• Bank structural features / stability
• Riparian condition and connectivity
• Physiochemical – temperature, DO, metals, nutrients, turbidity, etc.
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Mill Creek
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Salmon and trout habitat requirements include:
• adequate but not excessive stream flows
• cool well-oxygenated unpolluted water
• streambed gravels that are relatively free of fine-sediments
• adequate food supply
• instream structural diversity (interposed pools, riffles, hiding and resting cover)
Washington State Dept of Fish Wildlife
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Physical stream characteristics affect stream organisms by defining:
• Habitat volume
• Habitat quality
• Disturbance magnitude
• Disturbance frequency
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Habitat varies over spatial & temporal scales
Stream CorridorRestoration, 199x
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Scalar Unit DefinitionRole in Habitat
Characterization
Watershed Basin
Area defined by topography that contributes water and sediment to the stream network
Determines boundary conditions within which river operates
Segment Physiographically defined unit, based on relief, morphology and landscape position
Determines boundary conditions within which river operates
Reach Type Length of channel with uniform constraints resulting in a specific assemblage of geomorphic units
Describes channel planform and geometry
Geomorphic Unit
Fluvial channel forms representing distinct form-process associations
Determines channel character and behavior
Habitat Type Patches of relatively uniform flow and substrate characteristics
Describes ecologically relevant hydraulic and substrate conditions
LargeScale
FineScale
Heirarchical Classification System
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103 m 102 m 101 m 100 m 10-1 m
Watershed Segment Reach Type GeomorphicUnit
MicrohabitatType
How is each scale important to the species of interest?
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Temporal Variability incorporates ‘predictable’ and ‘unpredictable’ cycles
Macroinverts
Salmon
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Physical habitat a function of processes operating at multiple spatial and temporal scales
How do we objectively assess it?
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Define Stream Habitat Types (Classification)
• Bisson et al, 1982
• McCain et al, 1990 (USFS)
• Hawkins et al, 1993 (USFS)
• Thomson et al, 2001 (UK, AUS)
Fish -Centric
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McCain et al, 1990
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McCain et al, 1990
Bisson et al, 1982
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Hawkins et al, 1993
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Hawkins et al, 1993
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McCain et al, 1990
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Hydraulic Habitat
Flow types can be distinguished by velocity and depth using Froude Number
F =v
gd
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Panfil & Jacobson, 2000
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Thomson et al, 2001
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Stream Habitat types are created and maintained by erosion and deposition of sediments.
Hjulstrom’s Diagram
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Mechanics of Habitat Formation
• Shear Stress/Velocity Reversal Hypothesis
• Helical Flow
• Contraction/Expansion of Flow
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t = rghs v ~ f(Rs)
Knighton, 1998
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Helical flow in meander bends
Knighton, 1998
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Flow contraction and expansion
Wohl, 1998
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Increased roughness reduces shear, promoting deposition of finer material
McBain & Trush, 2004
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Diversity is a function of fluctuations in erosion and deposition processes over varying scales
What promotes Habitat Diversity?
Disturbance
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• Natural flow regime
• Varying sediment inputs
• Structural diversity - LWD
Natural stream systems are subject to the full spectrum of spatial & temporal disturbances
Episodic Sediment Transport
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Natural Flow Regime
• 5 characteristics: Frequency
Magnitude
Duration
Timing
Rate of Change
• Key factor = extremes included
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Disturbance acts to ‘reset’ processes
Mount, 1995
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Large Woody Debris
• Increases local scour and deposition
• Provides structural habitat
• Transient nature (moves, breaks, clumps, decays)
All add to habitat diversity and complexity
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Buffington & Montgomery 1999
Plane Bed
Wood-poorPool-riffle
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Buffington & Montgomery 1999
Wood-richPool-riffle
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Stream habitat diversity maintained over time
Species adapt
• Salmon – spawning and run timing
• Foothill Yellow-legged Frog – oviposition timing
• Cottonwood regeneration – accidental forest
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Movement to Feed
Movement to Refuge
Movement to Spawn
Movement to Spawn Movement to Feed
Refugia from harsh environmental
conditions (e.g., extreme temperatures
or flows) with unfavorable growth
conditions
Spawning habitat with incubation
of eggs
Mosaic of feeding habitat(s)
with favorable growth conditions
Habitat 2
Habitat 1
Habitat
3
Redrawn by Bledsoe from Schlosser (1995)Diversity in Trout Habitat
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Alterations to flow regime & sediment supply alter habitat diversity & biodiversity
Stream Corridor Restoration, 1998
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Alterations to Stream Systems
• Flow extraction – diversions – groundwater
withdrawal
• Flow augmentation– ag runoff– hydropower
• Sedimentation – development – logging– mining
• Sediment Loss– dams– mining
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• Channel Bed Coarsening• Loss of Fines/Gravels• Vegetation Encroachment• Low bed mobility
Degradation
• Channel Bed Fining• Excess Fines/Gravels• Lack of vegetation• High bed mobility
Aggradation
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Effect of Dams
• Block Sediment
• “Flatline” Hydrograph
• Disrupt Connectivity
• Channel Degradation – bed coarsening, loss of fines/gravels
• Loss of extreme flows (loss of disturbance) – low bed mobility, vegetation encroachment, low habitat diversity
• Block habitat access, alter water chemistry, shift from lentic to lotic system
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What can we do to improve spawning habitat conditions
downstream of dams?