Upload File

Download - Searching for sequences at NCBI: BLASTSearching for sequences at NCBI:-Gene-based Entrez, Nucleotide, Protein BLAST-Organism-based Taxonomy Browser PopSet (Population Sets) * * * *

Transcript
Page 1: Searching for sequences at NCBI: BLASTSearching for sequences at NCBI:-Gene-based Entrez, Nucleotide, Protein BLAST-Organism-based Taxonomy Browser PopSet (Population Sets) * * * *

1

Searching for sequences at NCBI:-Gene-based

Entrez, Nucleotide, ProteinBLAST

-Organism-basedTaxonomy BrowserPopSet (Population Sets)

*

*

*

*

**

These are text-based searches!

Not sequencesimilarity!

Are theseguaranteed tobe orthologs?

Use BLAST to bring in more sequences.

Page 2: Searching for sequences at NCBI: BLASTSearching for sequences at NCBI:-Gene-based Entrez, Nucleotide, Protein BLAST-Organism-based Taxonomy Browser PopSet (Population Sets) * * * *

2

Organism-based Searching

-Taxonomy browser-PopSet

*

Page 3: Searching for sequences at NCBI: BLASTSearching for sequences at NCBI:-Gene-based Entrez, Nucleotide, Protein BLAST-Organism-based Taxonomy Browser PopSet (Population Sets) * * * *

3

within speciespolymorphismis also found inPopSet

Page 4: Searching for sequences at NCBI: BLASTSearching for sequences at NCBI:-Gene-based Entrez, Nucleotide, Protein BLAST-Organism-based Taxonomy Browser PopSet (Population Sets) * * * *

4

Use BLAST to bring in more sequences.


Top Related

NCBI FieldGuide NCBI Molecular Biology Resources Part 2 November 2008 Peter Cooper
NCBI FieldGuide NCBI Molecular Biology Resources Part 2 November 2008 Peter Cooper
Protein database ..... of NCBI
Protein database ..... of NCBI
Searching the NCBI Databases
Searching the NCBI Databases
Clean up sequences with multiple >GI numbers when downloaded from NCBI BLAST website [ Example of one sequence and the duplication clean up for phylo tree
Clean up sequences with multiple >GI numbers when downloaded from NCBI BLAST website [ Example of one sequence and the duplication clean up for phylo tree
Using NCBI
Using NCBI
TIFFANY GOM EZ - tgomez.github.io · August 2012 - May 2016 // EDUCATION // •Pulled data sets of thousands of gene and protein sequences from large databases, NCBI and KEGG •Predicted
TIFFANY GOM EZ - tgomez.github.io · August 2012 - May 2016 // EDUCATION // •Pulled data sets of thousands of gene and protein sequences from large databases, NCBI and KEGG •Predicted
Ncbi basic intro_v_pitt_kent_osu
Ncbi basic intro_v_pitt_kent_osu
XWRAPComposer - ecology labfaculty.cse.tamu.edu/caverlee/pubs/liu06xwrap.pdfservice, such as NCBI Blast Web service, that will return homologs (other genes with similar sequences)
XWRAPComposer - ecology labfaculty.cse.tamu.edu/caverlee/pubs/liu06xwrap.pdfservice, such as NCBI Blast Web service, that will return homologs (other genes with similar sequences)