PROTEIN DATABASEA.Rabinson

II M.Sc.Biotech2013501021

TYPE YOUR DESIRED PROTEIN

e

Ex.collagen

Will get a option like “Conserved domain “ about that Protein .

Conserved Domain The Conserved Domain Database (CDD) is a database of well-annotatedmultiple sequence alignment models and derived database search models,for ancient domains and full-length proteins.

select

CD tree

CD tree is a helper application to view and examine conserved domainsCurated at NCBI .CD tree works with Cn3D as its alignment viewer/editor ,and its used for both classification and research tool for functional annotation .

Sequence alignment is used to identify the similarity between consequence of Functional ,structural , or evolutionary relationship sequences

Protein Clusters :Is a collection of related protein seq’ consist of protein derived from The annotation of whole genomes , organelles and plasmids.It currently limited to Archaea, Bacteria, Plants, Fungi, Protozoans, and Viruses

Protein Structure

CHEMICALS

BIO SYSTEM

Is a group of molecules that intract new biological systemIt provides links One type of biosystem is a biological pathway, which can consist of interacting genes, proteins, and small molecules. Another type of biosystem is a disease, which can involve components such as genes, biomarkers, and drugs.

The Compound-centric BioActivity service reports the available biological screening results for a single or a set of chemical samples. This service provide means for one to examine and compare biological outcomes across multiple biological tests. Please specify compounds using the given input methods. To retrieve specific test results, please specify bioassays.

Pubchem bioassay

Pub chem CompoundThe PubChem Compound Database contains validated chemical depiction information provided to describe substances in PubChem Substance. Structures stored within PubChem Compounds are pre-clustered and cross-referenced by identity and similarity groups

Links from PubChem's chemical structure records to other Entrez databases provide information on biological properties. These include links to PubMed scientific literature and NCBI's protein 3D structure resource. Links to PubChem's bioassay database present the results of biological screening. Links to depositor web sites provide further information. A PubChem FTP site, Download Facility, Power User Gateway(PUG),Standardization Service, Score Matrix Service, Structure Clustering, and Deposition Gateway are also available.PubChem provides tips and example code to allow users to add PubChem search tool (free) in their sites. A PubChem publication site provides links to published articles

Pubchem SubstanceThe PubChem Substance Database contains descriptions of samples, from a variety of sources, and links to biological screening results that are available in PubChem BioAssay. If the chemical contents of a sample are known, the description includes links to PubChem Compound.

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