sequence/structure alignment resources from ncbi steve bryant protein data bank rutgers university...

22
Sequence/Structure Alignment Resources from NCBI Steve Bryant Protein Data Bank Rutgers University November 19, 2005

Post on 21-Dec-2015

216 views

Category:

Documents


0 download

TRANSCRIPT

Page 1: Sequence/Structure Alignment Resources from NCBI Steve Bryant Protein Data Bank Rutgers University November 19, 2005

Sequence/Structure Alignment Resources from NCBI

Steve Bryant

Protein Data BankRutgers University

November 19, 2005

Page 2: Sequence/Structure Alignment Resources from NCBI Steve Bryant Protein Data Bank Rutgers University November 19, 2005

… Structure look-up tools

… Structure-structure alignments

… Alignment tools in client software

… Conserved domain family alignments *

… Domain subfamily analysis tools *

Sequence / Structure Alignment Resources from NCBI…

Page 3: Sequence/Structure Alignment Resources from NCBI Steve Bryant Protein Data Bank Rutgers University November 19, 2005

Entrez Search Engine ...

Page 4: Sequence/Structure Alignment Resources from NCBI Steve Bryant Protein Data Bank Rutgers University November 19, 2005

Entrez Retrieval System ...

Protein Sequences

MEDLINEAbstracts

BLASTSequenceSimilarity

Protein Sequences

3D Structures

Nucleotide Sequences

Term FrequencyStatistics

VAST StructureSimilarity

BLASTSequenceSimilarity

1,500,000 users ...60,000,000 hits ...

… per day

Page 5: Sequence/Structure Alignment Resources from NCBI Steve Bryant Protein Data Bank Rutgers University November 19, 2005

Entrez Search Engine ...

Page 6: Sequence/Structure Alignment Resources from NCBI Steve Bryant Protein Data Bank Rutgers University November 19, 2005

Protein Sequence Records ...

Page 7: Sequence/Structure Alignment Resources from NCBI Steve Bryant Protein Data Bank Rutgers University November 19, 2005

PubMed Links ...

Page 8: Sequence/Structure Alignment Resources from NCBI Steve Bryant Protein Data Bank Rutgers University November 19, 2005

PubMed Links ...

Page 9: Sequence/Structure Alignment Resources from NCBI Steve Bryant Protein Data Bank Rutgers University November 19, 2005

Related Structure Links ...

Page 10: Sequence/Structure Alignment Resources from NCBI Steve Bryant Protein Data Bank Rutgers University November 19, 2005

Related Structure Links ...

Page 11: Sequence/Structure Alignment Resources from NCBI Steve Bryant Protein Data Bank Rutgers University November 19, 2005

Related Structure Link ...

Page 12: Sequence/Structure Alignment Resources from NCBI Steve Bryant Protein Data Bank Rutgers University November 19, 2005

Related Structure Alignment ...

Page 13: Sequence/Structure Alignment Resources from NCBI Steve Bryant Protein Data Bank Rutgers University November 19, 2005

Related Structure Alignment …

Cn3D

Page 14: Sequence/Structure Alignment Resources from NCBI Steve Bryant Protein Data Bank Rutgers University November 19, 2005

Related Structure Links ...

Page 15: Sequence/Structure Alignment Resources from NCBI Steve Bryant Protein Data Bank Rutgers University November 19, 2005

Related Structure Link ...

Page 16: Sequence/Structure Alignment Resources from NCBI Steve Bryant Protein Data Bank Rutgers University November 19, 2005

Structure Neighbors of 2A14 ...

Page 17: Sequence/Structure Alignment Resources from NCBI Steve Bryant Protein Data Bank Rutgers University November 19, 2005

Structure Neighbor Alignment …

Cn3D

Page 20: Sequence/Structure Alignment Resources from NCBI Steve Bryant Protein Data Bank Rutgers University November 19, 2005

Leptin Threading Prediction, 1995 …

Page 22: Sequence/Structure Alignment Resources from NCBI Steve Bryant Protein Data Bank Rutgers University November 19, 2005

… Structure look-up tools

… Structure-structure alignments

… Alignment tools in client software

… Conserved domain family alignments *

… Domain subfamily analysis tools *

Sequence / Structure Alignment Resources from NCBI…