e oog ge - surfaceoncology.com · let gene expression changes in cd45 + tumor infiltrating...

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0(57.6peFL¿F $QtLEoGLes 7KDt +DYe 7KeUDpeXtLF $QtLtXPoU $FtLYLt\ LQ 0LFe 'LsUXpt tKe ,QtegULt\ oI tKe 5etLQDO 3LgPeQteG (pLtKeOLXP LQ &\QoPoOgXs 0oQNe\s .eUU\ ) :KLte 0DttKeZ 5DXsFK -LQg +XD .DtKeULQe + :DOsK &KULstLQe ( 0LOOeU &KULstopKeU & :eOOs 'eYDpUegDsDQ 0ooGOe\ %eQMDPLQ + Lee 6Fott & &KDppeO 3DPeOD 0 +oOODQG -oQDtKDQ $ +LOO 6XUIDFe 2QFoOog\ ,QF &DPEULGge 0$ 3UeseQteG Dt tKe $PeULFDQ $ssoFLDtLoQ IoU &DQFeU 5eseDUFK $QQXDO 0eetLQg _ 0DUFK _ $tODQtD *$ %DFNgUoXQG 0(57.0eGLDteG (IIeUoF\tosLs oI $poptotLF &eOOs &oQtUoOs 0DFUopKDge )XQFtLoQDO 5espoQse &KDUDFteULstLFs oI &DQGLGDte 0(57. 7KeUDpeXtLF $QtLEoGLes 'XDO 5oOes oI 0(57. LQ &DQFeU ,PPXQoPoGXODtoU\ Pleiotropic negative regulator of immune responses, promoting tissue homeostasis Reduces immune cell activation by clearing apoptotic cells Dampens signals at the interphase of innate and adaptive immunity to reduce T-cell effector functions MERTK deficiency associated with antitumor responses characterized by increased inflammatory cytokine production 7XPoU,QtULQsLF Aberrantly expressed in multiple cancer cell types, including solid tumors and hematologic malignancies Intrinsic driver of tumor growth and survival via PI3K, MAPK, and STAT pathways Lymphocyte Isolation RNA-Seq (SMART-Seq ® 2) CD45 + Sort * 5 11 16 21 25 Days Post-Implant 0 500 1000 1500 2000 2500 Tumor Volume (mm 3 ) Isotype SRF2 *64% TGI; p < 0.0293 GAS6 Apoptotic Cell Alters Macrophage Responses to Stimuli MERTK Promotes Efferocytosis and Reduces Inflammatory Responses TNF ܤIL-12 IL-6 &oQFOXsLoQs 0(57. %OoFNDGe DQG tKe 5LsN oI 5etLQDO 7o[LFLt\ 5DtLoQDOe Genetic disruption of MERTK leads to alterations in RPE cells and vision loss. Inhibition of MERTK using a small molecule inhibitor leads to changes in structure of the RPE and photoreceptors in treated mice. The known permeability restriction of large molecules to pass the blood-retinal barrier presents the possibility that the RPE would be spared during MERTK antibody treatment. .e\ 4XestLoQ Will a selective MERTK antibody lead to RPE toxicity? 3ODQ oI $FtLoQ Perform a repeat-dose cynomolgus monkey study to evaluate RPE toxicity. &\QoPoOgXs 0oQNe\ 53( 7o[LFoOog\ 6tXG\ 'esLgQ 2 MERTK antibodies with distinct epitope binding properties 30 mg/kg, 100 mg/kg, and vehicle control arms (N = 3 per group) Antibody injected IV on Days 1, 8, 15, 22, 29; study termination Day 30-32 Endpoints: ophthalmic examinations (predose, Day 14, Day 30); electroretinograms (ERG) (predose, Day 16, Day 28) Evaluation of postmortem retinal histology 0(57. &\Qo 5etLQDO 7o[LFoOog\ 6tXG\ )LQGLQgs No abnormal in-life observations with MERTK antibody administration Normal ophthalmic examinations and ERG measurements Overall pathology findings: Normal retinal histology in vehicle-treated animals Microscopic findings observed for both antibodies, but generally occurred at a greater incidence and severity with SRF1 (higher affinity) than with SRF2 (lower affinity) A panel of fully human MERTK blocking antibodies was developed. In vitro, MERTK blocking antibodies: Inhibited GAS6 ligand-driven AKT phosphorylation and CD20 upregulation in Kasumi-2 cells Inhibited primary human and murine macrophage efferocytosis of apoptotic Jurkat cells In vivo, MERTK blocking antibodies: Showed efficacy in syngeneic murine tumor models as monotherapies and in combination with anti-PD-L1 Led to gene expression changes indicative of immune cell activation and monocyte infiltration 5eIeUeQFes Burstyn-Cohen Neuron 2012 Cook JCI 2013 Del Amo Prog Retin Eye Res 2017 Dransfield Cell Death Dis 2015 Duncan IOVS 2003 Lemke Nat Rev Immunol 2008 Liu BMC Bioinformatics 2016 Mukherjee Lancet 2017 Sayama Tox Path 2018 Vollrath PLOS Genetics 2015 A multidose study in cynomolgus monkeys revealed that MERTK therapeutic antibodies disrupted the integrity of the RPE. Because of observed treatment-related retinal disruption, further development of therapeutic MERTK antibodies was not pursued. As several therapeutics that block MERTK function are currently in preclinical development, a thorough evaluation of retinal toxicity is warranted. Normal Cynomolgus Monkey Retinal H istology B Vacuolation of the Photoreceptor O uter Segments Cell Displacement in the RPE (Foamy Cells) Single-Cell Necrosis in the O uter Nuclear Layer A RPE: Retinal Pigmented Epithelium O S: Photoreceptor O uter Segments IS: Photoreceptor Inner Segments O NL: O uter Nuclear Layer O PL: O uter Plexiform Layer INL: Inner Nuclear Layer IPL: Inner Plexiform Layer GCL: Ganglion Cell Layer O S IS O NL O PL INL RPE SRF1 (100 mg/kg) SRF2 (100 mg/kg) SRF1 (100 mg/kg) Vehicle SRF2 (100 mg/kg) SRF1 (100 mg/kg) SRF2 (100 mg/kg) H istology of A) w ild-type and B) Mertk -/ - murine retina Burstyn-Cohen, Neuron 2012 &7 &oOoQ &DQFeU 0oGeO 0& &oOoQ &DQFeU 0oGeO (0oQotKeUDp\ 0& &oOoQ &DQFeU 0oGeO ($QtL3'L &oPELQDtLoQ 65) 6XEstDQtLDOO\ ,QÀXeQFes *eQoPLF 5espoQses LQ &' + 7XPoU L\PpKoF\tes LeIt Gene expression changes in CD45 + tumor infiltrating lymphocytes are displayed by volcano plot where log2 fold-change between SRF2 treatment vs isotype control is shown on the x-axis and p-value is represented on the y-axis. 5LgKt Top 51 genes upregulated by SRF2 are highlighted by heatmap and hierarchically clustered; gene expression is row-normalized. ,Q 9LYo (I¿FDF\ oI 0(57. %OoFNLQg $QtLEoGLes 51$ ([pUessLoQ $QDO\sLs oI 0(57. $QtLEoG\7UeDteG 7XPoUs Transcriptional profiles from ImmGen consortium identify gene signatures specifically enriched in mouse immune cell subsets. Each subset-specific signature was analyzed for SRF2-mediated bias in CD45 + transcriptional profiles from the MC38 model. The proportion of genes biased for each signature was rank- ordered and analyzed for immune cell subset enrichment. 0& 7XPoU L\PpKoF\te 51$ 6eTXeQFLQg MC38 tumors (n = 5/group) harvested on Day 10 post-dosing were minced with a razor blade and digested with collagenase type 1 and DNase. CD45 + cells were FACS-sorted into 96-well plates and prepared for RNA sequencing using standard SMART-Seq ® 2 protocols. 65) 7UeDtPeQt 3UoPotes D &\toto[LF 7XPoU 0LFUoeQYLUoQPeQt Based on analyses of genes induced by SRF2, transcript counts for relevant cytotoxic genes were extracted and plotted for each replicate sample. 65) (QULFKes IoU 0oQoF\te DQG 'eQGULtLF &eOO$ssoFLDteG 6LgQDtXUes ImmGen Cell Type % of Cell-Specific Genes Biased Monocyte Colony Forming Unit 83 Dendritic Cell, Liver 83 Classical Monocytes, MHCII - 83 Classical Monocytes, MHCII + 83 Monocyte 81 Dendritic Cell, Lung 81 Dendritic Cell, Small Intestine 81 Neutrophils, Synovial Fluid 81 Peritoneal Neutrophils, Thioglycolate 81 CD4 T cell 52 Spleen Naïve CD4 4 + 8 - TCR + 25 - 62L hi 44 lo 51 Mesenteric LN Naïve CD4 4 + 8 - TCR + 25 - 62L hi 44 lo 51 Pancreatic LN CD4, BDC Islet-Reactive TCR Tg 51 Subcutaneous LN Memory-Phenotype CD8 4 - 8 + TCR + 25 - 44 hi 122 hi 51 Peyer Patches Naïve CD8 4 - 8 + TCR + 25 - 62L hi 44 lo 51 Thymic TCRγ-δ, All DN 51 Thymic Vg1.1 + Vd6.3 + , Immature 51 0 1000 2000 3000 4000 Normalized Transcript Count Normalized Transcript Count Normalized Transcript Count 0 50 100 150 200 0 200 400 600 800 0 500 1000 1500 2000 0 20 40 60 80 0 50 100 150 200 250 Isotype SRF2 Isotype SRF2 Isotype SRF2 Isotype SRF2 Isotype SRF2 Isotype SRF2 GZMB KLRA7 PRF1 TNFRSF9 KLRB1 XCL1 SRF2 Induces Cytotoxic Genes SRF2 Induces NK Markers SRF2 Induces T-Cell and Myeloid Markers of Activation Scml2 Axin2 Slc22a18 Cdh1 Dgke Clec10a Gmpr Pemt Wnt9a Dbt Trim25 Dlat Mid2 Scmh1 H19 Tspan32 Gpr107 Fer Slfn4 Hddc2 Dazap2 Clec2g Narf Cdc45 Mcts1 Mnt Brat1 Btbd17 Gna12 Klf6 Scpep1 Sdhd Cdh4 Rtca Bcl6b Comt Ccnd2 Cox5a Ngfr Ckmt1 Itgb2 Xpo6 Pih1d2 Arvcf Alox12 Cav2 Rem1 Tbx4 Gnai3 Drp2 Tfe3 Isotype SRF2 * * ** * 0 5 10 15 0 500 1000 1500 2000 Days on Study Isotype SRF2 Anti-PD-L1 SRF2 + anti-PD-L1 0 5 10 15 0 300 600 900 1200 Days Post-Implant Isotype SRF1v SRF2v 5 11 16 21 25 Days Post-Implant Tumor Volume (mm 3 ) Tumor Volume (mm 3 ) 0 500 1000 1500 2000 2500 *47%TGI; p = 0.0292 Tumor Volume (mm 3 ) *37% TGI; p = 0.02 **48% TGI; p = 0.0002 Isotype SRF2 *64% TGI; p < 0.0293 0.5 1.0 2.0 5E-04 5E-03 5E-02 5E-01 Fold Change SRF2 vs Isotype Log(t−test p−YDOXe 65) Ys ,sot\pe Gzmb Xcl1 Tnfrsf9 Prf1 Gpr155 Mgat2 Klra7 Tef Eed Crlf2 R3hcc1 Dennd6a Mettl17 Slfn3 Zfp346 Adamts10 Pank4 Pced1a Cep295 Mllt11 0.2 0.5 1.0 2.0 5.0 Monocyte Precursor Fold Change SRF2 vs Isotype Log (t−test p−value) 81% 0.01 0.02 0.05 0.10 0.20 0.50 1.00 0.01 0.02 0.05 0.10 0.20 0.50 1.00 Mature Splenic B Cell 51% 10 4 10 3 10 2 10 1 10 0 10 -1 -25 Concentration (ng/mL) % of Control 25 50 75 100 SRF1 SRF2 125 0 UNC1062 + GAS6 MER590 + GAS6 GAS6 Control 10 5 10 4 10 3 10 2 GAS6 No GAS6 SRF Ab 10 4 10 3 0 50 0 100 150 200 pAKT S473 IgG CD20 MER590 SRF1 SRF2 Control 10 4 10 3 10 2 $QtLEoG\ %LQGLQg DQG ,QKLELtLoQ 0(57. %OoFNLQg $QtLEoGLes ,QKLELt 0DFUopKDge (IIeUoF\tosLs $ 0(57. $QtLEoGLes %LQG to +XPDQ 0oQoF\te'eULYeG 0DFUopKDges Monocyte-derived macrophages were stained with SRF1, SRF2, or a commercially available anti-MERTK monoclonal antibody (MER590, BioLegend) and analyzed by flow cytometry. % 0(57. %OoFNLQg $QtLEoGLes ,QKLELt *$6,QGXFeG $.7 3KospKoU\ODtLoQ LQ .DsXPL &eOOs Kasumi-2 B cell ALL cells were serum starved overnight and incubated for 1 h in the presence of anti-MERTK antibodies. Cells were stimulated with 20 μg/mL GAS6 for 30 min, fixed, and stained for pAKT S473. & 0(57. %OoFNLQg $QtLEoGLes ,QKLELt *$6,QGXFeG &' 8pUegXODtLoQ LQ .DsXPL &eOOs Kasumi-2 cells were screened for cell surface markers regulated by GAS6 stimulation (LEGENDScreen, BioLegend). CD20 was identified as a GAS6 responsive receptor that was inhibited by the MERTK small molecule inhibitor UNC1062 (AK Scientific), the anti-MERTK antibody MER590 (BioLegend), SRF1, and SRF2. ' Cells were incubated for 1 h with MERTK antibodies or small molecule inhibitors and cultured with 20 μg/mL GAS6 or PBS for 3 days. Cells were stained for CD20 expression and analyzed by flow cytometry. (IIeUoF\tosLs $ssD\ 2YeUYLeZ 0(57. %OoFNDGe $IIeFts $poptotLF &eOO 7etKeULQg to 0DFUopKDges 65) DQG 65) ,QKLELt 0DFUopKDge (IIeUoF\tosLs Human monocyte-derived macrophages (left graph) or murine bone marrow-derived macrophages (right graph) were pre-incubated with antibodies or controls for 1 h. Apoptotic Jurkat cells were then added and incubated overnight. Cells were fixed and analyzed to determine the number of Jurkat cells remaining vs negative control (isotype) and positive control (UNC1062). Human monocyte-derived macrophages were incubated with controls, small molecules, or antibodies for 1 h. Apoptotic Jurkat cells were then added and incubated overnight. Apoptotic Jurkat cells were almost completely efferocytosed in the isotype control well. UNC1062 inhibited efferocytosis but not apoptotic cell tethering to macrophages, while the anti-MERTK antibody prevented both tethering and efferocytosis. Images were captured by brightfield microscopy. An FSC-SSC gate was drawn on a no-Jurkat control well to determine the background number of macrophages in the gate. A macrophage plus apoptotic Jurkat well treated with isotype control represents maximal efferocytosis. A macrophage plus apoptotic Jurkat well treated with UNC1062 represents minimal efferocytosis. (IIeUoF\tosLs $ssD\ *DtLQg 6tUDteg\ Apoptotic Jurkat cells remaining: 44000 50 μM 10 μM UNC1062 50 μM Apoptotic Jurkat cells remaining: 29000 Anti-MERTK Antibody Apoptotic Jurkat cells remaining: 1800 50 μM Isotype Control $ % & ' Jurkat 71.3 0 50K 100K 150K 200K 250K 0 50K 100K 150K 200K 250K 10 μg/mL SRF1 N = 39414 Jurkat 74.2 0 50K 100K 150K 200K 250K 0 50K 100K 150K 200K 250K 10 μM UNC1062 Jurkat cells N = 46842 Jurkat 12.3 0 50K 100K 150K 200K 250K 0 50K 100K 150K 200K 250K Isotype Control N = 2040 Jurkat 6.05 0 50K 100K 150K 200K 250K 0 50K 100K 150K 200K 250K No Jurkat Control N = 502 Macrophages SSC-A FSC-A SRF1 10 0 10 1 10 2 10 3 10 0 10 -1 10 1 10 2 10 3 10 4 -20 0 20 40 60 80 100 Concentration (ng/mL) % Inhibition of Efferocytosis -20 0 20 40 60 80 100 Concentration (ng/mL) % Inhibition of Efferocytosis SRF2 SRF2 Macrophage MERTK binds via its ligand GAS6 to exposed phosphatidylserine on the surface of apoptotic cells, leading to efferocytosis. MERTK deficiency increases production of proinflammatory cytokines after macrophage activation. 558 MERTK, a member of the TAM (TYRO3, AXL, MERTK) family of receptor tyrosine kinases, is a promising therapeutic target expressed on macrophages that can regulate innate antitumor immune responses. MERTK regulates efferocytosis by macrophages and governs how these cells respond to apoptotic debris. Reduced tumor growth in Mertk-deficient mice is accompanied by increased inflammatory cytokine production and immune cell activation. MERTK is also expressed in retinal pigmented epithelium (RPE) cells of the eye where it mediates phagocytosis of photoreceptor outer segment fragments. Mutations that disrupt MERTK expression or kinase activity lead to marked retinal degeneration and blindness in mice, rats, and humans. Permeation of large molecules to the retina is restricted by the blood-retinal barrier, which may restrict therapeutic IgG molecules from accessing RPE cells. In order to inhibit MERTK in macrophages while sparing RPE cells, a diverse panel of high-affinity antibodies to MERTK was developed and studied in vitro and in vivo. To investigate effects on RPE biology with MERTK antibodies, a multidose, 4-week cynomolgus monkey study with several in-life and postmortem ophthalmologic endpoints was designed. *oDO Determine if MERTK antibodies that modulate tumor immunity in murine syngeneic models will cause disruption of the RPE in cynomolgus monkeys. Antibody Human Affinity (M) Human Avidity (M) Murine Avidity (M) Human Efferocytosis IC 50 (ng/mL) Murine Efferocytosis IC 50 (ng/mL) SRF1 8.7E-11 3.3E-10 Not Active 37.3 Not Active SRF2 4.4E-09 5.1E-10 3.6E-09 605.2 121 Model # Cells Strain Dosing Start Dose Days Dosed CT26 2.5E5 Balb/C 2 days post-inoculation Isotype / SRF2 (50 mg/kg IP) 3, 7, 9, 13, 17 MC38 (mono) 1E6 C57BL/6 2 days post-inoculation Isotype / SRF1v / SRF2v (20 mg/kg IP) 2, 5, 9, 12 MC38 (combo) 1E5 C57BL/6 Tumor size 70 mm 3 Isotype / SRF2 (20 mg/kg IP) ± anti-PD-L1 (10 mg/kg IP) 0, 3, 7, 10 N = 10/group. Tumors were measured 3x/week. Data shown are mean ± SEM. SRF2v (SRF2 variant) has enhanced murine cross-reactivity. Fully human IgG4 No human or murine AXL/TYRO3 binding Block GAS6 binding Selective against a > 4500 human membrane protein panel SRF1 has picomolar affinity to MERTK; SRF2 is murine cross-reactive Analysis Cells fixed with paraformaldehyde • Number of Jurkat cells remaining in culture measured Efferocytosis Antibodies and controls added to macrophages Apoptotic Jurkat cells layered on and incubated overnight Apoptosis induction Jurkat cells exposed to UV light for 5 min followed by 2-3 h of culture Macrophage differentiation • Human monocytes differentiated into macrophages with 4-7 days of M-CSF

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Page 1: e oog ge - surfaceoncology.com · Let Gene expression changes in CD45 + tumor infiltrating lymphocytes are displayed by volcano plot where log2 fold-change between SRF2 treatment

pe t o es t e e pe t t t o t t e s pt t e teg t o t e et g e te p t e o o g s o e se te tt e s g t e e s st e e stop e e s e p eg s oo e e Lee ott ppe e o o t

e o og ge

ese te t t e e sso t o o e ese eet g t t

g o

e te e o tos s o poptot e s o t o s op ge t o espo se

te st s o te e pe t t o es

o es o eo o to

• Pleiotropic negative regulator of immune responses, promoting tissue homeostasis

• Reduces immune cell activation by clearing apoptotic cells• Dampens signals at the interphase of innate and adaptive immunity to reduce

T-cell effector functions• MERTK deficiency associated with antitumor responses characterized by

increased inflammatory cytokine production

o t s• Aberrantly expressed in multiple cancer cell types, including solid tumors and

hematologic malignancies• Intrinsic driver of tumor growth and survival via PI3K, MAPK, and STAT

pathways

Lymphocyte Isolation RNA-Seq (SMART-Seq® 2)

CD45+ Sort

*

5 11 16 21 25Days Post-Implant

0

500

1000

1500

2000

2500

Tum

or V

olum

e (m

m3 )

IsotypeSRF2

*64% TGI; p < 0.0293

GAS6

Apoptotic Cell

Alters MacrophageResponses to Stimuli

MERTK

Promotes Efferocytosisand Reduces Inflammatory

Responses

TNFIL-12IL-6

o s o s

o e t e s o et o tt o e

• Genetic disruption of MERTK leads to alterations in RPE cells and vision loss.• Inhibition of MERTK using a small molecule inhibitor leads to changes in

structure of the RPE and photoreceptors in treated mice.• The known permeability restriction of large molecules to pass the blood-retinal

barrier presents the possibility that the RPE would be spared during MERTK antibody treatment.

e est o Will a selective MERTK antibody lead to RPE toxicity?

o t o Perform a repeat-dose cynomolgus monkey study to evaluate RPE toxicity.

o o g s o e o o og t es g• 2 MERTK antibodies with distinct epitope binding properties• 30 mg/kg, 100 mg/kg, and vehicle control arms (N = 3 per group)• Antibody injected IV on Days 1, 8, 15, 22, 29; study termination Day 30-32• Endpoints: ophthalmic examinations (predose, Day 14, Day 30);

electroretinograms (ERG) (predose, Day 16, Day 28)• Evaluation of postmortem retinal histology

o et o o og t gs• No abnormal in-life observations with MERTK antibody administration

» Normal ophthalmic examinations and ERG measurements• Overall pathology findings:

» Normal retinal histology in vehicle-treated animals » Microscopic findings observed for both antibodies, but generally occurred at a greater incidence and severity with SRF1 (higher affinity) than with SRF2 (lower affinity)

• A panel of fully human MERTK blocking antibodies was developed.

• In vitro, MERTK blocking antibodies: » Inhibited GAS6 ligand-driven AKT phosphorylation and CD20 upregulation in Kasumi-2 cells

» Inhibited primary human and murine macrophage efferocytosis of apoptotic Jurkat cells

• In vivo, MERTK blocking antibodies: » Showed efficacy in syngeneic murine tumor models as monotherapies and in combination with anti-PD-L1

» Led to gene expression changes indicative of immune cell activation and monocyte infiltration

e e e es Burstyn-Cohen Neuron 2012 Cook JCI 2013 Del Amo Prog Retin Eye Res 2017 Dransfield Cell Death Dis 2015 Duncan IOVS 2003

Lemke Nat Rev Immunol 2008 Liu BMC Bioinformatics 2016 Mukherjee Lancet 2017 Sayama Tox Path 2018 Vollrath PLOS Genetics 2015

• A multidose study in cynomolgus monkeys revealed that MERTK therapeutic antibodies disrupted the integrity of the RPE.

• Because of observed treatment-related retinal disruption, further development of therapeutic MERTK antibodies was not pursued.

• As several therapeutics that block MERTK function are currently in preclinical development, a thorough evaluation of retinal toxicity is warranted.

Normal Cynomolgus Monkey Retinal H istology

B

Vacuolation of the Photoreceptor O uter Segments

Cell Displacement in the RPE (Foamy Cells) Single-Cell Necrosis in the O uter Nuclear Layer

ARPE: Retinal Pigmented EpitheliumO S: Photoreceptor O uter SegmentsIS: Photoreceptor Inner SegmentsO NL: O uter Nuclear LayerO PL: O uter Plexiform LayerINL: Inner Nuclear LayerIPL: Inner Plexiform LayerGCL: Ganglion Cell Layer

O S

IS

O NL

O PL

INL

RPE

SRF1(100 mg/kg)

SRF2(100 mg/kg)

SRF1(100 mg/kg)Vehicle

SRF2(100 mg/kg)

SRF1(100 mg/kg)

SRF2(100 mg/kg)

H istology of A) w ild-type and B) Mertk-/ - murine retina

Burstyn-Cohen, Neuron 2012

o o e o e o o e o e ( o ot e p

o o e o e ( t L o t o

st t e es e o espo ses + o L p o tes

Le t Gene expression changes in CD45+ tumor infiltrating lymphocytes are displayed by volcano plot where log2 fold-change between SRF2 treatment vs isotype control is shown on the x-axis and p-value is represented on the y-axis. g t Top 51 genes upregulated by SRF2 are highlighted by heatmap and hierarchically clustered; gene expression is row-normalized.

o o o g t o es

p ess o s s o t o e te o s

Transcriptional profiles from ImmGen consortium identify gene signatures specifically enriched in mouse immune cell subsets. Each subset-specific signature was analyzed for SRF2-mediated bias in CD45+ transcriptional profiles from the MC38 model. The proportion of genes biased for each signature was rank-ordered and analyzed for immune cell subset enrichment.

o L p o te e e g MC38 tumors (n = 5/group) harvested on Day 10 post-dosing were minced with a razor blade and digested with collagenase type 1 and DNase. CD45+ cells were FACS-sorted into 96-well plates and prepared for RNA sequencing using standard SMART-Seq® 2 protocols.

e t e t o otes toto o oe o e t

Based on analyses of genes induced by SRF2, transcript counts for relevant cytotoxic genes were extracted and plotted for each replicate sample.

es o o o te e t e sso te g t es

ImmGen Cell Type % of Cell-Specific Genes Biased

Monocyte Colony Forming Unit 83Dendritic Cell, Liver 83Classical Monocytes, MHCII- 83Classical Monocytes, MHCII+ 83Monocyte 81Dendritic Cell, Lung 81Dendritic Cell, Small Intestine 81Neutrophils, Synovial Fluid 81Peritoneal Neutrophils, Thioglycolate 81CD4 T cell 52Spleen Naïve CD4 4+ 8- TCR+ 25- 62Lhi 44lo 51Mesenteric LN Naïve CD4 4+ 8- TCR+ 25- 62Lhi 44lo 51Pancreatic LN CD4, BDC Islet-Reactive TCR Tg 51Subcutaneous LN Memory-Phenotype CD8 4- 8+ TCR+ 25- 44hi 122hi 51Peyer Patches Naïve CD8 4- 8+ TCR+ 25- 62Lhi 44lo 51Thymic TCRγ-δ, All DN 51Thymic Vg1.1+ Vd6.3+, Immature 51

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Isotype SRF2 Isotype SRF2 Isotype SRF2Isotype SRF2 Isotype SRF2 Isotype SRF2

GZMB KLRA7PRF1 TNFRSF9KLRB1 XCL1

SRF2 Induces Cytotoxic Genes SRF2 Induces NK Markers SRF2 Induces T-Cell and Myeloid Markers of Activation

Scml2Axin2Slc22a18Cdh1DgkeClec10aGmprPemtWnt9aDbtTrim25DlatMid2Scmh1H19Tspan32Gpr107FerSlfn4Hddc2Dazap2Clec2gNarfCdc45Mcts1MntBrat1Btbd17Gna12Klf6Scpep1SdhdCdh4RtcaBcl6bComtCcnd2Cox5aNgfrCkmt1Itgb2Xpo6Pih1d2ArvcfAlox12Cav2Rem1Tbx4Gnai3Drp2Tfe3

Isotype SRF2

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IsotypeSRF2Anti-PD-L1SRF2 + anti-PD-L1

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m3 )

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*47%TGI; p = 0.0292

Tum

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m3 )

*37% TGI; p = 0.02**48% TGI; p = 0.0002

IsotypeSRF2

*64% TGI; p < 0.0293

0.5 1.0 2.0

5E-04

5E-03

5E-02

5E-01

Fold Change SRF2 vs Isotype

Log(

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Xcl1

Tnfrsf9Prf1

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Slfn3

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Adamts10

Pank4

Pced1a

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0.2 0.5 1.0 2.0 5.0

Monocyte Precursor

Fold Change SRF2 vs Isotype

Log

(t−te

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Fold change SRF2 vs isotype

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0.501.00

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Mature Splenic B Cell

51%

10410310210110010-1-25

Concentration (ng/mL)

% o

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25

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100

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UNC1062+ GAS6

MER590+ GAS6

GAS6

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105104103102

GAS6No GAS6SRF Ab

1041030

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pAKT S473IgG CD20

MER590

SRF1

SRF2

Control

104103102

t o g t o

o g t o es t op ge e o tos s

t o es to o o te e e op ges Monocyte-derived macrophages were stained with SRF1, SRF2, or a commercially available anti-MERTK monoclonal antibody (MER590, BioLegend) and analyzed by flow cytometry.

o g t o es t e osp o t o s e s Kasumi-2 B cell ALL cells were serum starved overnight and incubated for 1 h in the presence of anti-MERTK antibodies. Cells were stimulated with 20 μg/mL GAS6 for 30 min, fixed, and stained for pAKT S473.

o g t o es t e p eg t o s e s Kasumi-2 cells were screened for cell surface markers regulated by GAS6 stimulation (LEGENDScreen, BioLegend). CD20 was identified as a GAS6 responsive receptor that was inhibited by the MERTK small molecule inhibitor UNC1062 (AK Scientific), the anti-MERTK antibody MER590 (BioLegend), SRF1, and SRF2. Cells were incubated for 1 h with MERTK antibodies or small molecule inhibitors and cultured with 20 μg/mL GAS6 or PBS for 3 days. Cells were stained for CD20 expression and analyzed by flow cytometry.

e o tos s ss e e o e e ts poptot e et e g to op ges

t op ge e o tos s

Human monocyte-derived macrophages (left graph) or murine bone marrow-derived macrophages (right graph) were pre-incubated with antibodies or controls for 1 h. Apoptotic Jurkat cells were then added and incubated overnight. Cells were fixed and analyzed to determine the number of Jurkat cells remaining vs negative control (isotype) and positive control (UNC1062).

Human monocyte-derived macrophages were incubated with controls, small molecules, or antibodies for 1 h. Apoptotic Jurkat cells were then added and incubated overnight. Apoptotic Jurkat cells were almost completely efferocytosed in the isotype control well. UNC1062 inhibited efferocytosis but not apoptotic cell tethering to macrophages, while the anti-MERTK antibody prevented both tethering and efferocytosis. Images were captured by brightfield microscopy.

An FSC-SSC gate was drawn on a no-Jurkat control well to determine the background number of macrophages in the gate. A macrophage plus apoptotic Jurkat well treated with isotype control represents maximal efferocytosis. A macrophage plus apoptotic Jurkat well treated with UNC1062 represents minimal efferocytosis.

e o tos s ss t g t teg

Apoptotic Jurkat cells remaining: 44000 50 µM

10 µM UNC1062

50 µMApoptotic Jurkat cells remaining: 29000

Anti-MERTK Antibody

Apoptotic Jurkat cells remaining: 1800 50 µM

Isotype Control

Jurkat71.3

0 50K 100K 150K 200K 250K0

50K

100K

150K

200K

250K

10 µg/mL SRF1

N = 39414

Jurkat74.2

0 50K 100K 150K 200K 250K0

50K

100K

150K

200K

250K

10 µM UNC1062

Jurkat cells

N = 46842

Jurkat12.3

0 50K 100K 150K 200K 250K0

50K

100K

150K

200K

250K

Isotype Control

N = 2040

Jurkat6.05

0 50K 100K 150K 200K 250K0

50K

100K

150K

200K

250K

No Jurkat Control

N = 502

Macrophages

SSC

-A

FSC-A

SRF1

100 101 102 10310010-1 101 102 103 104-20

0

20

40

60

80

100

Concentration (ng/mL)

% In

hibi

tion

of E

ffero

cyto

sis

-20

0

20

40

60

80

100

Concentration (ng/mL)

% In

hibi

tion

of E

ffero

cyto

sis

SRF2SRF2

Macrophage MERTK binds via its ligand GAS6 to exposed phosphatidylserine on the surface of apoptotic cells, leading to efferocytosis. MERTK deficiency increases production of proinflammatory cytokines after macrophage activation.

558

• MERTK, a member of the TAM (TYRO3, AXL, MERTK) family of receptor tyrosine kinases, is a promising therapeutic target expressed on macrophages that can regulate innate antitumor immune responses.

• MERTK regulates efferocytosis by macrophages and governs how these cells respond to apoptotic debris.

• Reduced tumor growth in Mertk-deficient mice is accompanied by increased inflammatory cytokine production and immune cell activation.

• MERTK is also expressed in retinal pigmented epithelium (RPE) cells of the eye where it mediates phagocytosis of photoreceptor outer segment fragments.

• Mutations that disrupt MERTK expression or kinase activity lead to marked retinal degeneration and blindness in mice, rats, and humans.

• Permeation of large molecules to the retina is restricted by the blood-retinal barrier, which may restrict therapeutic IgG molecules from accessing RPE cells.

• In order to inhibit MERTK in macrophages while sparing RPE cells, a diverse panel of high-affinity antibodies to MERTK was developed and studied in vitro and in vivo.

• To investigate effects on RPE biology with MERTK antibodies, a multidose, 4-week cynomolgus monkey study with several in-life and postmortem ophthalmologic endpoints was designed.

• o Determine if MERTK antibodies that modulate tumor immunity in murine syngeneic models will cause disruption of the RPE in cynomolgus monkeys.

Antibody Human Affinity (M)

Human Avidity (M)

Murine Avidity (M)

Human Efferocytosis IC50 (ng/mL)

Murine Efferocytosis IC50 (ng/mL)

SRF1 8.7E-11 3.3E-10 Not Active 37.3 Not ActiveSRF2 4.4E-09 5.1E-10 3.6E-09 605.2 121

Model # Cells Strain Dosing Start Dose Days DosedCT26 2.5E5 Balb/C 2 days post-inoculation Isotype / SRF2 (50 mg/kg IP) 3, 7, 9, 13, 17

MC38 (mono) 1E6 C57BL/6 2 days post-inoculation Isotype / SRF1v / SRF2v (20 mg/kg IP) 2, 5, 9, 12MC38 (combo) 1E5 C57BL/6 Tumor size 70 mm3 Isotype / SRF2 (20 mg/kg IP) ± anti-PD-L1 (10 mg/kg IP) 0, 3, 7, 10

N = 10/group. Tumors were measured 3x/week. Data shown are mean ± SEM. SRF2v (SRF2 variant) has enhanced murine cross-reactivity.

• Fully human IgG4• No human or murine AXL/TYRO3 binding• Block GAS6 binding• Selective against a > 4500 human membrane protein panel • SRF1 has picomolar affinity to MERTK; SRF2 is murine cross-reactive

Analysis• Cells fixed with paraformaldehyde

• Number of Jurkat cells remaining in culture

measured

Efferocytosis• Antibodies and controls

added to macrophages• Apoptotic Jurkat cells layered on and incubated overnight

Apoptosis induction• Jurkat cells exposed to UV

light for 5 min followed by 2-3 h of culture

Macrophage differentiation• Human monocytes

differentiated into macrophages with 4-7 days of M-CSF