e oog ge - surfaceoncology.com · let gene expression changes in cd45 + tumor infiltrating...
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pe t o es t e e pe t t t o t t e s pt t e teg t o t e et g e te p t e o o g s o e se te tt e s g t e e s st e e stop e e s e p eg s oo e e Lee ott ppe e o o t
e o og ge
ese te t t e e sso t o o e ese eet g t t
g o
e te e o tos s o poptot e s o t o s op ge t o espo se
te st s o te e pe t t o es
o es o eo o to
• Pleiotropic negative regulator of immune responses, promoting tissue homeostasis
• Reduces immune cell activation by clearing apoptotic cells• Dampens signals at the interphase of innate and adaptive immunity to reduce
T-cell effector functions• MERTK deficiency associated with antitumor responses characterized by
increased inflammatory cytokine production
o t s• Aberrantly expressed in multiple cancer cell types, including solid tumors and
hematologic malignancies• Intrinsic driver of tumor growth and survival via PI3K, MAPK, and STAT
pathways
Lymphocyte Isolation RNA-Seq (SMART-Seq® 2)
CD45+ Sort
*
5 11 16 21 25Days Post-Implant
0
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2500
Tum
or V
olum
e (m
m3 )
IsotypeSRF2
*64% TGI; p < 0.0293
GAS6
Apoptotic Cell
Alters MacrophageResponses to Stimuli
MERTK
Promotes Efferocytosisand Reduces Inflammatory
Responses
TNFIL-12IL-6
o s o s
o e t e s o et o tt o e
• Genetic disruption of MERTK leads to alterations in RPE cells and vision loss.• Inhibition of MERTK using a small molecule inhibitor leads to changes in
structure of the RPE and photoreceptors in treated mice.• The known permeability restriction of large molecules to pass the blood-retinal
barrier presents the possibility that the RPE would be spared during MERTK antibody treatment.
e est o Will a selective MERTK antibody lead to RPE toxicity?
o t o Perform a repeat-dose cynomolgus monkey study to evaluate RPE toxicity.
o o g s o e o o og t es g• 2 MERTK antibodies with distinct epitope binding properties• 30 mg/kg, 100 mg/kg, and vehicle control arms (N = 3 per group)• Antibody injected IV on Days 1, 8, 15, 22, 29; study termination Day 30-32• Endpoints: ophthalmic examinations (predose, Day 14, Day 30);
electroretinograms (ERG) (predose, Day 16, Day 28)• Evaluation of postmortem retinal histology
o et o o og t gs• No abnormal in-life observations with MERTK antibody administration
» Normal ophthalmic examinations and ERG measurements• Overall pathology findings:
» Normal retinal histology in vehicle-treated animals » Microscopic findings observed for both antibodies, but generally occurred at a greater incidence and severity with SRF1 (higher affinity) than with SRF2 (lower affinity)
• A panel of fully human MERTK blocking antibodies was developed.
• In vitro, MERTK blocking antibodies: » Inhibited GAS6 ligand-driven AKT phosphorylation and CD20 upregulation in Kasumi-2 cells
» Inhibited primary human and murine macrophage efferocytosis of apoptotic Jurkat cells
• In vivo, MERTK blocking antibodies: » Showed efficacy in syngeneic murine tumor models as monotherapies and in combination with anti-PD-L1
» Led to gene expression changes indicative of immune cell activation and monocyte infiltration
e e e es Burstyn-Cohen Neuron 2012 Cook JCI 2013 Del Amo Prog Retin Eye Res 2017 Dransfield Cell Death Dis 2015 Duncan IOVS 2003
Lemke Nat Rev Immunol 2008 Liu BMC Bioinformatics 2016 Mukherjee Lancet 2017 Sayama Tox Path 2018 Vollrath PLOS Genetics 2015
• A multidose study in cynomolgus monkeys revealed that MERTK therapeutic antibodies disrupted the integrity of the RPE.
• Because of observed treatment-related retinal disruption, further development of therapeutic MERTK antibodies was not pursued.
• As several therapeutics that block MERTK function are currently in preclinical development, a thorough evaluation of retinal toxicity is warranted.
Normal Cynomolgus Monkey Retinal H istology
B
Vacuolation of the Photoreceptor O uter Segments
Cell Displacement in the RPE (Foamy Cells) Single-Cell Necrosis in the O uter Nuclear Layer
ARPE: Retinal Pigmented EpitheliumO S: Photoreceptor O uter SegmentsIS: Photoreceptor Inner SegmentsO NL: O uter Nuclear LayerO PL: O uter Plexiform LayerINL: Inner Nuclear LayerIPL: Inner Plexiform LayerGCL: Ganglion Cell Layer
O S
IS
O NL
O PL
INL
RPE
SRF1(100 mg/kg)
SRF2(100 mg/kg)
SRF1(100 mg/kg)Vehicle
SRF2(100 mg/kg)
SRF1(100 mg/kg)
SRF2(100 mg/kg)
H istology of A) w ild-type and B) Mertk-/ - murine retina
Burstyn-Cohen, Neuron 2012
o o e o e o o e o e ( o ot e p
o o e o e ( t L o t o
st t e es e o espo ses + o L p o tes
Le t Gene expression changes in CD45+ tumor infiltrating lymphocytes are displayed by volcano plot where log2 fold-change between SRF2 treatment vs isotype control is shown on the x-axis and p-value is represented on the y-axis. g t Top 51 genes upregulated by SRF2 are highlighted by heatmap and hierarchically clustered; gene expression is row-normalized.
o o o g t o es
p ess o s s o t o e te o s
Transcriptional profiles from ImmGen consortium identify gene signatures specifically enriched in mouse immune cell subsets. Each subset-specific signature was analyzed for SRF2-mediated bias in CD45+ transcriptional profiles from the MC38 model. The proportion of genes biased for each signature was rank-ordered and analyzed for immune cell subset enrichment.
o L p o te e e g MC38 tumors (n = 5/group) harvested on Day 10 post-dosing were minced with a razor blade and digested with collagenase type 1 and DNase. CD45+ cells were FACS-sorted into 96-well plates and prepared for RNA sequencing using standard SMART-Seq® 2 protocols.
e t e t o otes toto o oe o e t
Based on analyses of genes induced by SRF2, transcript counts for relevant cytotoxic genes were extracted and plotted for each replicate sample.
es o o o te e t e sso te g t es
ImmGen Cell Type % of Cell-Specific Genes Biased
Monocyte Colony Forming Unit 83Dendritic Cell, Liver 83Classical Monocytes, MHCII- 83Classical Monocytes, MHCII+ 83Monocyte 81Dendritic Cell, Lung 81Dendritic Cell, Small Intestine 81Neutrophils, Synovial Fluid 81Peritoneal Neutrophils, Thioglycolate 81CD4 T cell 52Spleen Naïve CD4 4+ 8- TCR+ 25- 62Lhi 44lo 51Mesenteric LN Naïve CD4 4+ 8- TCR+ 25- 62Lhi 44lo 51Pancreatic LN CD4, BDC Islet-Reactive TCR Tg 51Subcutaneous LN Memory-Phenotype CD8 4- 8+ TCR+ 25- 44hi 122hi 51Peyer Patches Naïve CD8 4- 8+ TCR+ 25- 62Lhi 44lo 51Thymic TCRγ-δ, All DN 51Thymic Vg1.1+ Vd6.3+, Immature 51
0
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4000
Nor
mal
ized
Tra
nscr
ipt C
ount
Nor
mal
ized
Tra
nscr
ipt C
ount
Nor
mal
ized
Tra
nscr
ipt C
ount
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Isotype SRF2 Isotype SRF2 Isotype SRF2Isotype SRF2 Isotype SRF2 Isotype SRF2
GZMB KLRA7PRF1 TNFRSF9KLRB1 XCL1
SRF2 Induces Cytotoxic Genes SRF2 Induces NK Markers SRF2 Induces T-Cell and Myeloid Markers of Activation
Scml2Axin2Slc22a18Cdh1DgkeClec10aGmprPemtWnt9aDbtTrim25DlatMid2Scmh1H19Tspan32Gpr107FerSlfn4Hddc2Dazap2Clec2gNarfCdc45Mcts1MntBrat1Btbd17Gna12Klf6Scpep1SdhdCdh4RtcaBcl6bComtCcnd2Cox5aNgfrCkmt1Itgb2Xpo6Pih1d2ArvcfAlox12Cav2Rem1Tbx4Gnai3Drp2Tfe3
Isotype SRF2
** **
*
0 5 10 150
500
1000
1500
2000
Days on Study
IsotypeSRF2Anti-PD-L1SRF2 + anti-PD-L1
0 5 10 150
300
600
900
1200
Days Post-Implant
IsotypeSRF1vSRF2v
5 11 16 21 25Days Post-Implant
Tum
or V
olum
e (m
m3 )
Tum
or V
olum
e (m
m3 )
0
500
1000
1500
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2500
*47%TGI; p = 0.0292
Tum
or V
olum
e (m
m3 )
*37% TGI; p = 0.02**48% TGI; p = 0.0002
IsotypeSRF2
*64% TGI; p < 0.0293
0.5 1.0 2.0
5E-04
5E-03
5E-02
5E-01
Fold Change SRF2 vs Isotype
Log(
t−te
st p
−e
s so
tpe
Gzmb
Xcl1
Tnfrsf9Prf1
Gpr155
Mgat2
Klra7
Tef
Eed
Crlf2
R3hcc1
Dennd6a
Mettl17
Slfn3
Zfp346
Adamts10
Pank4
Pced1a
Cep295Mllt11
0.2 0.5 1.0 2.0 5.0
Monocyte Precursor
Fold Change SRF2 vs Isotype
Log
(t−te
st p
−val
ue)
81%
0.2 0.5 1.0 2.0 5.0
Fold change SRF2 vs isotype
0.010.02
0.050.100.20
0.501.00
0.010.02
0.050.100.20
0.501.00
Mature Splenic B Cell
51%
10410310210110010-1-25
Concentration (ng/mL)
% o
f Con
trol
25
50
75
100
SRF1SRF2
125
0
UNC1062+ GAS6
MER590+ GAS6
GAS6
Control
105104103102
GAS6No GAS6SRF Ab
1041030
50
0
100
150
200
pAKT S473IgG CD20
MER590
SRF1
SRF2
Control
104103102
t o g t o
o g t o es t op ge e o tos s
t o es to o o te e e op ges Monocyte-derived macrophages were stained with SRF1, SRF2, or a commercially available anti-MERTK monoclonal antibody (MER590, BioLegend) and analyzed by flow cytometry.
o g t o es t e osp o t o s e s Kasumi-2 B cell ALL cells were serum starved overnight and incubated for 1 h in the presence of anti-MERTK antibodies. Cells were stimulated with 20 μg/mL GAS6 for 30 min, fixed, and stained for pAKT S473.
o g t o es t e p eg t o s e s Kasumi-2 cells were screened for cell surface markers regulated by GAS6 stimulation (LEGENDScreen, BioLegend). CD20 was identified as a GAS6 responsive receptor that was inhibited by the MERTK small molecule inhibitor UNC1062 (AK Scientific), the anti-MERTK antibody MER590 (BioLegend), SRF1, and SRF2. Cells were incubated for 1 h with MERTK antibodies or small molecule inhibitors and cultured with 20 μg/mL GAS6 or PBS for 3 days. Cells were stained for CD20 expression and analyzed by flow cytometry.
e o tos s ss e e o e e ts poptot e et e g to op ges
t op ge e o tos s
Human monocyte-derived macrophages (left graph) or murine bone marrow-derived macrophages (right graph) were pre-incubated with antibodies or controls for 1 h. Apoptotic Jurkat cells were then added and incubated overnight. Cells were fixed and analyzed to determine the number of Jurkat cells remaining vs negative control (isotype) and positive control (UNC1062).
Human monocyte-derived macrophages were incubated with controls, small molecules, or antibodies for 1 h. Apoptotic Jurkat cells were then added and incubated overnight. Apoptotic Jurkat cells were almost completely efferocytosed in the isotype control well. UNC1062 inhibited efferocytosis but not apoptotic cell tethering to macrophages, while the anti-MERTK antibody prevented both tethering and efferocytosis. Images were captured by brightfield microscopy.
An FSC-SSC gate was drawn on a no-Jurkat control well to determine the background number of macrophages in the gate. A macrophage plus apoptotic Jurkat well treated with isotype control represents maximal efferocytosis. A macrophage plus apoptotic Jurkat well treated with UNC1062 represents minimal efferocytosis.
e o tos s ss t g t teg
Apoptotic Jurkat cells remaining: 44000 50 µM
10 µM UNC1062
50 µMApoptotic Jurkat cells remaining: 29000
Anti-MERTK Antibody
Apoptotic Jurkat cells remaining: 1800 50 µM
Isotype Control
Jurkat71.3
0 50K 100K 150K 200K 250K0
50K
100K
150K
200K
250K
10 µg/mL SRF1
N = 39414
Jurkat74.2
0 50K 100K 150K 200K 250K0
50K
100K
150K
200K
250K
10 µM UNC1062
Jurkat cells
N = 46842
Jurkat12.3
0 50K 100K 150K 200K 250K0
50K
100K
150K
200K
250K
Isotype Control
N = 2040
Jurkat6.05
0 50K 100K 150K 200K 250K0
50K
100K
150K
200K
250K
No Jurkat Control
N = 502
Macrophages
SSC
-A
FSC-A
SRF1
100 101 102 10310010-1 101 102 103 104-20
0
20
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100
Concentration (ng/mL)
% In
hibi
tion
of E
ffero
cyto
sis
-20
0
20
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60
80
100
Concentration (ng/mL)
% In
hibi
tion
of E
ffero
cyto
sis
SRF2SRF2
Macrophage MERTK binds via its ligand GAS6 to exposed phosphatidylserine on the surface of apoptotic cells, leading to efferocytosis. MERTK deficiency increases production of proinflammatory cytokines after macrophage activation.
558
• MERTK, a member of the TAM (TYRO3, AXL, MERTK) family of receptor tyrosine kinases, is a promising therapeutic target expressed on macrophages that can regulate innate antitumor immune responses.
• MERTK regulates efferocytosis by macrophages and governs how these cells respond to apoptotic debris.
• Reduced tumor growth in Mertk-deficient mice is accompanied by increased inflammatory cytokine production and immune cell activation.
• MERTK is also expressed in retinal pigmented epithelium (RPE) cells of the eye where it mediates phagocytosis of photoreceptor outer segment fragments.
• Mutations that disrupt MERTK expression or kinase activity lead to marked retinal degeneration and blindness in mice, rats, and humans.
• Permeation of large molecules to the retina is restricted by the blood-retinal barrier, which may restrict therapeutic IgG molecules from accessing RPE cells.
• In order to inhibit MERTK in macrophages while sparing RPE cells, a diverse panel of high-affinity antibodies to MERTK was developed and studied in vitro and in vivo.
• To investigate effects on RPE biology with MERTK antibodies, a multidose, 4-week cynomolgus monkey study with several in-life and postmortem ophthalmologic endpoints was designed.
• o Determine if MERTK antibodies that modulate tumor immunity in murine syngeneic models will cause disruption of the RPE in cynomolgus monkeys.
Antibody Human Affinity (M)
Human Avidity (M)
Murine Avidity (M)
Human Efferocytosis IC50 (ng/mL)
Murine Efferocytosis IC50 (ng/mL)
SRF1 8.7E-11 3.3E-10 Not Active 37.3 Not ActiveSRF2 4.4E-09 5.1E-10 3.6E-09 605.2 121
Model # Cells Strain Dosing Start Dose Days DosedCT26 2.5E5 Balb/C 2 days post-inoculation Isotype / SRF2 (50 mg/kg IP) 3, 7, 9, 13, 17
MC38 (mono) 1E6 C57BL/6 2 days post-inoculation Isotype / SRF1v / SRF2v (20 mg/kg IP) 2, 5, 9, 12MC38 (combo) 1E5 C57BL/6 Tumor size 70 mm3 Isotype / SRF2 (20 mg/kg IP) ± anti-PD-L1 (10 mg/kg IP) 0, 3, 7, 10
N = 10/group. Tumors were measured 3x/week. Data shown are mean ± SEM. SRF2v (SRF2 variant) has enhanced murine cross-reactivity.
• Fully human IgG4• No human or murine AXL/TYRO3 binding• Block GAS6 binding• Selective against a > 4500 human membrane protein panel • SRF1 has picomolar affinity to MERTK; SRF2 is murine cross-reactive
Analysis• Cells fixed with paraformaldehyde
• Number of Jurkat cells remaining in culture
measured
Efferocytosis• Antibodies and controls
added to macrophages• Apoptotic Jurkat cells layered on and incubated overnight
Apoptosis induction• Jurkat cells exposed to UV
light for 5 min followed by 2-3 h of culture
Macrophage differentiation• Human monocytes
differentiated into macrophages with 4-7 days of M-CSF