flow cytometry core facility - · pdf files a l k i n s t i t u t e f o r b i o l o g i c a l...
TRANSCRIPT
![Page 1: Flow Cytometry Core Facility - · PDF fileS A L K I N S T I T U T E F O R B I O L O G I C A L S T U D I E S Carolyn O’Connor Director, Flow Cytometry Core Facility . Salk.edu/fccf](https://reader031.vdocuments.net/reader031/viewer/2022030418/5aa50e677f8b9ab4788cae74/html5/thumbnails/1.jpg)
S A L K I N S T I T U T E F O R B I O L O G I C A L S T U D I E S
Carolyn O’Connor Director, Flow Cytometry Core Facility
Salk.edu/fccf [email protected]
Flow Cytometry Core Facility … cell analysis & cell sorting
![Page 2: Flow Cytometry Core Facility - · PDF fileS A L K I N S T I T U T E F O R B I O L O G I C A L S T U D I E S Carolyn O’Connor Director, Flow Cytometry Core Facility . Salk.edu/fccf](https://reader031.vdocuments.net/reader031/viewer/2022030418/5aa50e677f8b9ab4788cae74/html5/thumbnails/2.jpg)
bacteria monitoring
Brewing & Winemaking
Food & Pharmaceutical
Manufacture
yeast analysis
Complete Blood Count
DNA abnormality
Cancer Diagnosis Immunodeficiency
disorders
Immunology Developmental
biology
Neuroscience
Stem cells Aging
Cancer biology
Transplantation
Metabolism
Microbiology
Aquatic Ecology phytoplankton, algae, bacteria
Plant cell biology
… cell analysis & cell sorting
Biomedical Research
Plant & Marine Biology Industrial
Flow Cytometry
Clinical & Diagnostics
![Page 3: Flow Cytometry Core Facility - · PDF fileS A L K I N S T I T U T E F O R B I O L O G I C A L S T U D I E S Carolyn O’Connor Director, Flow Cytometry Core Facility . Salk.edu/fccf](https://reader031.vdocuments.net/reader031/viewer/2022030418/5aa50e677f8b9ab4788cae74/html5/thumbnails/3.jpg)
1947 Spore detector *US Army sponsored
Cytometry … the science of measuring cells
1953 Cell Counter *Counting and sizing
1969-1972 Fluorescence based cytometers
1965 Droplet based
cell sorter Ink-jet printing: droplet technology
![Page 4: Flow Cytometry Core Facility - · PDF fileS A L K I N S T I T U T E F O R B I O L O G I C A L S T U D I E S Carolyn O’Connor Director, Flow Cytometry Core Facility . Salk.edu/fccf](https://reader031.vdocuments.net/reader031/viewer/2022030418/5aa50e677f8b9ab4788cae74/html5/thumbnails/4.jpg)
Flow Cytometry … cell analysis & cell sorting
Multi-cellular organisms are complex
what cells are present?
what are their roles?
how many of each cell?
what is the significance
of each cell?
are they
interacting?
health
disease aging
![Page 5: Flow Cytometry Core Facility - · PDF fileS A L K I N S T I T U T E F O R B I O L O G I C A L S T U D I E S Carolyn O’Connor Director, Flow Cytometry Core Facility . Salk.edu/fccf](https://reader031.vdocuments.net/reader031/viewer/2022030418/5aa50e677f8b9ab4788cae74/html5/thumbnails/5.jpg)
Identifying cells by antibody labeling
we can color code cells using fluorescent labelled antibodies antibodies recognize and bind unique shapes
specific proteins on cells
e.g. tumor biopsy liquid suspension.. no solids!!
CD4 T cells CD8 T cells
CD4 T cell
CD8 T cell
Two types of immune cells
CD8 protein
![Page 6: Flow Cytometry Core Facility - · PDF fileS A L K I N S T I T U T E F O R B I O L O G I C A L S T U D I E S Carolyn O’Connor Director, Flow Cytometry Core Facility . Salk.edu/fccf](https://reader031.vdocuments.net/reader031/viewer/2022030418/5aa50e677f8b9ab4788cae74/html5/thumbnails/6.jpg)
fluorescent proteins engineered fluorescent proteins
genes inserted into cell genomes
expressed in stem cells
form fluorescent tissues
DNA dyes can inform cell cycle phase
Probes can be combined in sophisticated experiments
Other examples of labels
pH Mitochondrial function
Reactive Oxygen Species
phagocytosis cell health oxidative stress
fluorescent indicators
![Page 7: Flow Cytometry Core Facility - · PDF fileS A L K I N S T I T U T E F O R B I O L O G I C A L S T U D I E S Carolyn O’Connor Director, Flow Cytometry Core Facility . Salk.edu/fccf](https://reader031.vdocuments.net/reader031/viewer/2022030418/5aa50e677f8b9ab4788cae74/html5/thumbnails/7.jpg)
Forward Scattered Light detector
Side scattered light and
fluorescence detectors
“Hydrodynamic focusing“ region
OUT To vibrating nozzle and/or waste tank
Sample profiling, cell by cell Fluorescent
sample IN
saline
Photons emitted
Blocker bar
Detectors convert photons to voltage for software interface
*Magnitude proportional to #
photons
Forward Scattered Light ~ size
Side Scattered Light ~ cell “complexity”
Series of dichroic mirrors
Scatter profile of blood
Scatter profile of blood
Fluorescent probe derived photons of
different wavelengths are quantified
![Page 8: Flow Cytometry Core Facility - · PDF fileS A L K I N S T I T U T E F O R B I O L O G I C A L S T U D I E S Carolyn O’Connor Director, Flow Cytometry Core Facility . Salk.edu/fccf](https://reader031.vdocuments.net/reader031/viewer/2022030418/5aa50e677f8b9ab4788cae74/html5/thumbnails/8.jpg)
Cells of interest can be purified from a
mixture
Isolating cells by “FACS”
…fluorescence is measured
… the drops get charged -
+ -
CD4 T cells CD8 T cells
CD8 T cells
an electric field guides the charged drops
CD4 T cells
+
+
–
–
of cells are created
Starting mixture
CD8
T ce
lls
CD4 T cells
![Page 9: Flow Cytometry Core Facility - · PDF fileS A L K I N S T I T U T E F O R B I O L O G I C A L S T U D I E S Carolyn O’Connor Director, Flow Cytometry Core Facility . Salk.edu/fccf](https://reader031.vdocuments.net/reader031/viewer/2022030418/5aa50e677f8b9ab4788cae74/html5/thumbnails/9.jpg)
Sorting technology in the core
InfluxTM sorter
10 sorted beads ~size of blood cell
Holder for 6 population (“6-way”) sorting
5 lasers 11 colors
![Page 10: Flow Cytometry Core Facility - · PDF fileS A L K I N S T I T U T E F O R B I O L O G I C A L S T U D I E S Carolyn O’Connor Director, Flow Cytometry Core Facility . Salk.edu/fccf](https://reader031.vdocuments.net/reader031/viewer/2022030418/5aa50e677f8b9ab4788cae74/html5/thumbnails/10.jpg)
How can we use this technology for
cancer research?
![Page 11: Flow Cytometry Core Facility - · PDF fileS A L K I N S T I T U T E F O R B I O L O G I C A L S T U D I E S Carolyn O’Connor Director, Flow Cytometry Core Facility . Salk.edu/fccf](https://reader031.vdocuments.net/reader031/viewer/2022030418/5aa50e677f8b9ab4788cae74/html5/thumbnails/11.jpg)
Pancreatic cancer
Lowest survival rate
3rd leading cause of cancer related deaths in the US
![Page 12: Flow Cytometry Core Facility - · PDF fileS A L K I N S T I T U T E F O R B I O L O G I C A L S T U D I E S Carolyn O’Connor Director, Flow Cytometry Core Facility . Salk.edu/fccf](https://reader031.vdocuments.net/reader031/viewer/2022030418/5aa50e677f8b9ab4788cae74/html5/thumbnails/12.jpg)
Innovative approaches still are failing.
using patient’s own immune system
to attack cancer
Better treatments are needed
what cells are present?
what are their roles? how many of each cell?
what is the significance
of each cell?
are they
interacting?
Tumor Micro-environment “Immuno-suppressive”
Cancer Supporting
What’s unique about pancreatic cancer?
“… coalition formed to accelerate next
generation immunotherapy ”
US Cancer Moonshot Initiative..
![Page 13: Flow Cytometry Core Facility - · PDF fileS A L K I N S T I T U T E F O R B I O L O G I C A L S T U D I E S Carolyn O’Connor Director, Flow Cytometry Core Facility . Salk.edu/fccf](https://reader031.vdocuments.net/reader031/viewer/2022030418/5aa50e677f8b9ab4788cae74/html5/thumbnails/13.jpg)
Pancreatic Tumor Microenvironment
Pancreatic stellate cell
Tumor cell
Pericyte
Lymphatic vessel
Blood vessel
Immune cells
DCs MØ
T cell
adapted from Junttila & Sauvage, Nature, 2013
HUGE cast of characters!
what are they doing?
Cells of the tumor micro-environment
IDENTIFY and ISOLATE: Complex 10+ antibody combinations
Multiple cell types (6 way sorting)
Determine activity: functional gene expression
who are they?
![Page 14: Flow Cytometry Core Facility - · PDF fileS A L K I N S T I T U T E F O R B I O L O G I C A L S T U D I E S Carolyn O’Connor Director, Flow Cytometry Core Facility . Salk.edu/fccf](https://reader031.vdocuments.net/reader031/viewer/2022030418/5aa50e677f8b9ab4788cae74/html5/thumbnails/14.jpg)
Informing novel therapy design
Micro-environment “Cancer supporting” state
Novel therapies for pancreatic cancer
Morgan Truitt, PhD – Laboratory of Dr. Ronald Evans
Novel therapeutic target: Tumor micro-environment
“Anti-tumor” state Micro-environment
00.10.20.30.40.50.60.7
Control Immunotherapy Drug A +Immunotherapy
Tumor Size (g)
![Page 15: Flow Cytometry Core Facility - · PDF fileS A L K I N S T I T U T E F O R B I O L O G I C A L S T U D I E S Carolyn O’Connor Director, Flow Cytometry Core Facility . Salk.edu/fccf](https://reader031.vdocuments.net/reader031/viewer/2022030418/5aa50e677f8b9ab4788cae74/html5/thumbnails/15.jpg)
Unraveling complex biology Disease model e.g. pancreatic cancer
Dissected complexity e.g. why can’t the immune system attack?
Develop novel strategies e.g. target the tumor micro-environment
Multi-color flow cytometry
![Page 16: Flow Cytometry Core Facility - · PDF fileS A L K I N S T I T U T E F O R B I O L O G I C A L S T U D I E S Carolyn O’Connor Director, Flow Cytometry Core Facility . Salk.edu/fccf](https://reader031.vdocuments.net/reader031/viewer/2022030418/5aa50e677f8b9ab4788cae74/html5/thumbnails/16.jpg)
Technology & Expertise
High content data
Accelerated discovery
A technology paradigm
Fluorescence Technology
Instrumentation
20 channels: cell sorter
50 channels: analytical cytometer
Novel Fluorescent
Polymers: Nobel Prize winning
technology (2000)
Fluorescent protein
engineering
![Page 17: Flow Cytometry Core Facility - · PDF fileS A L K I N S T I T U T E F O R B I O L O G I C A L S T U D I E S Carolyn O’Connor Director, Flow Cytometry Core Facility . Salk.edu/fccf](https://reader031.vdocuments.net/reader031/viewer/2022030418/5aa50e677f8b9ab4788cae74/html5/thumbnails/17.jpg)
Flow Cytometry Core Facility Conor Fitzpatrick
Pancreatic Cancer Project Morgan Truitt, Evans Laboratory
We are supported by:
J. Belcovson Sort Chamber
Salk Cores Administration Travis Berggren Angelee Ferber
Acknowledgements
![Page 18: Flow Cytometry Core Facility - · PDF fileS A L K I N S T I T U T E F O R B I O L O G I C A L S T U D I E S Carolyn O’Connor Director, Flow Cytometry Core Facility . Salk.edu/fccf](https://reader031.vdocuments.net/reader031/viewer/2022030418/5aa50e677f8b9ab4788cae74/html5/thumbnails/18.jpg)
![Page 19: Flow Cytometry Core Facility - · PDF fileS A L K I N S T I T U T E F O R B I O L O G I C A L S T U D I E S Carolyn O’Connor Director, Flow Cytometry Core Facility . Salk.edu/fccf](https://reader031.vdocuments.net/reader031/viewer/2022030418/5aa50e677f8b9ab4788cae74/html5/thumbnails/19.jpg)
Central Australia
Carolyn O’ConnorManaging Director, Flow Cytometry Core