Breeder Interface

Need for breeder interface

• To store, retrieve and use performance data in more efficient breeding decisions

• To connect and make available in user friendly query the publicly available genomics, genetics and breeding data

Functions

• Data uploading– Phenotypic data– Genotipic data– QTL information

• LA, LD, PBA• Genomic selection

– Sequence information• Interfaces developed to browse, query and download the

data by variety, location, trait, marker (allele), year, pedigree– Parents selection

• Tools and automation for genetic analysis

Breeder Toolbox @ GDR

Breeder Toolbox @ GDR

Fruitbreedomics

Fruitbreedomics

• GDR BT allows for phenotype or quantitative selection• Development of a new marker–trait module– Markers attributes

• Relative effect on each trait – allele attributes• Genomic attributes on a gbrowser: position e info on the region

(ld, genes, ..)– Accounting for multiple markers per trait

• Weighting system for markers by trait• Genomic selection

– Multi-stage selection