homework 3 1.plot the gene expression profile of the assigned 4 genes from nci60. 2.intersect the...
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Homework 3
1. Plot the gene expression profile of the assigned 4 genes from NCI60.
2. Intersect the same genes from SOURCE and protein-protein interactions.
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click
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Click color bar
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Similar expression genes
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Download raw data
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1. Download raw data2. The data will be a .zip file.3. There will be 68 separate files in there and will be difficult to retrieve your genes 68 times.
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To obtain a single “cleaned” file, you need to use the following steps.
Cleaned file=normalized and retrieved file.
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Select
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Find the NCI60 article
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Select
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Select
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1. Select all
3. Select
2. Select
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2. Select
1. Cancel the selection
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Wait for results.It may take more than 4 hrs.
Here are different steps for data retrieval.
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Select
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1. Select all data2. Open a new excel file and paste3. See next page
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1. Paste to Excel2. Find genes (ie. stk6) from column B
Name in excel 用‘編輯’選項中‘尋找’功能
3. Plot the figure
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Please plot your assigned genes by Excel
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TACC3
Hec
Nuf2
CENP-A
TPX2
HURP
LymphomaCarcinoma classification
NCI60Normal Tissue
Atlas
HeLa
Cell cycle
database
substrate
http://source.stanford.edu