lect5b qiime vm install mac - stanford...
TRANSCRIPT
![Page 1: Lect5b QIIME VM install mac - Stanford Universitystatweb.stanford.edu/~susan/Summer11/Lect5b_QIIME_VM.pdf · 2011-06-27 · 6/27/11 3 QIIME&virtual&machine&in&VirtualBox& 12 Install&VB&GuestAddi;ons&](https://reader034.vdocuments.net/reader034/viewer/2022050210/5f5cb41214afb4225674d613/html5/thumbnails/1.jpg)
6/27/11
1
QIIME virtual machine download and installa;on
Alexander V. Alekseyenko
Download QIIME Virtual Machine
Click the download link
1
Put the downloaded file on Desktop in directory QIIME
Click to unpack
2
Wait for Archive U;lity to finish
3
QIIME directory aKer unpacking
4
Installing QIIME virtual machine
5
Click New to add virtual machine
Click Con;nue
![Page 2: Lect5b QIIME VM install mac - Stanford Universitystatweb.stanford.edu/~susan/Summer11/Lect5b_QIIME_VM.pdf · 2011-06-27 · 6/27/11 3 QIIME&virtual&machine&in&VirtualBox& 12 Install&VB&GuestAddi;ons&](https://reader034.vdocuments.net/reader034/viewer/2022050210/5f5cb41214afb4225674d613/html5/thumbnails/2.jpg)
6/27/11
2
Virtual Machine configura;on
6
1. Type in name ‘QIIME’
2. Select ‘Linux’ 3. Select ‘Ubuntu (64 bit)’
4. Click
Selec;ng memory for the virtual machine
7
Select at least 1024MB memory (select more if your machine has more physical
memory)
Click
Select QIIME virtual machine hard disk
8
1. Put check mark
2. Select
3. Click icon
Locate unpacked QIIME image file
9
1. Select image
Click ‘Open’
Select QIIME virtual machine hard disk
10
Click ‘Con;nue’
QIIME virtual machine summary
11
Click to finish
![Page 3: Lect5b QIIME VM install mac - Stanford Universitystatweb.stanford.edu/~susan/Summer11/Lect5b_QIIME_VM.pdf · 2011-06-27 · 6/27/11 3 QIIME&virtual&machine&in&VirtualBox& 12 Install&VB&GuestAddi;ons&](https://reader034.vdocuments.net/reader034/viewer/2022050210/5f5cb41214afb4225674d613/html5/thumbnails/3.jpg)
6/27/11
3
QIIME virtual machine in VirtualBox
12
Install VB Guest Addi;ons
13
Click on Devices -‐> Install Guest Addi;ons…
Execute installa;on autorun
14
Click to ok
Execute autorun
15
Click to Run
Alterna;vely run from the command line
16
When Guest Addi;ons installa;on is complete, Re-‐start the QIIME virtual machine
17
![Page 4: Lect5b QIIME VM install mac - Stanford Universitystatweb.stanford.edu/~susan/Summer11/Lect5b_QIIME_VM.pdf · 2011-06-27 · 6/27/11 3 QIIME&virtual&machine&in&VirtualBox& 12 Install&VB&GuestAddi;ons&](https://reader034.vdocuments.net/reader034/viewer/2022050210/5f5cb41214afb4225674d613/html5/thumbnails/4.jpg)
6/27/11
4
Downloading reference sequences
18
In terminal type: �wget hfp://greengenes.lbl.gov/Download/Sequence_Data/Fasta_data_files/core_set_aligned.fasta.imputed
Downloading reference sequences
19
In terminal type: �wget hfp://greengenes.lbl.gov/Download/Sequence_Data/lanemask_in_1s_and_0s