lexrdf: an approach for representing biomedical ontologies in rdf

1

LexRDF: An Approach for Representing Biomedical Ontologies in RDF Cui Tao PhD, Jyotishman Pathak PhD, Harold R. Solbrig, Wei-Qi Wei, and Christopher G. Chute MD DrPH Division of Biomedical Statistics and Informatics, Mayo Clinic, Rochester, MN Contact email: [email protected] Introduction Property Examples Summary of Conclusions Association Concept, Property, and Reification OBO LexRDF Property Link AGROVOC LexRDF Ontology Meta-Information Entity LexRDF Association OWL LexRDF OBO LexRDF Orphanet LexRDF System Overview

Upload: octavius-michael

Post on 31-Dec-2015

24 views

Category:

Documents

0 download

Report

Download

Embed Size (px):

DESCRIPTION

OBO. LexRDF. LexRDF: An Approach for Representing Biomedical Ontologies in RDF Cui Tao PhD, Jyotishman Pathak PhD, Harold R. Solbrig, Wei-Qi Wei, and Christopher G. Chute MD DrPH Division of Biomedical Statistics and Informatics, Mayo Clinic, Rochester, MN Contact email: [email protected]. - PowerPoint PPT Presentation

TRANSCRIPT

Page 1: LexRDF: An Approach for Representing Biomedical Ontologies in RDF

LexRDF: An Approach for Representing Biomedical Ontologies in RDF

Cui Tao PhD, Jyotishman Pathak PhD, Harold R. Solbrig, Wei-Qi Wei, and Christopher G. Chute MD DrPHDivision of Biomedical Statistics and Informatics, Mayo Clinic, Rochester, MN

Contact email: [email protected]

Introduction

Property

Examples

Summary of Conclusions

Association

Concept, Property, and Reification

OBO

LexRDF

Property Link

AGROVOC

LexRDF

Ontology Meta-Information

Entity

LexRDF

Association

OWL

LexRDF

OBO

LexRDF

Orphanet

LexRDF

System Overview

Representing Ontologies, Taxonomies, & Business ...thematix.com/wp-content/uploads/2014/11/OntologyInUML-KendallNM… · Representing Ontologies, Taxonomies, & Business Vocabularies

Towards a General User Model Ontology (GUMO)4 Workshop Ontologies for Personal Memory Saarbrücken, May 25th, 2005 Reification-based RDF Representation Situational Statement / RDF

Ontologies and Languages for Representing Mathematical

1 RDF Schema pour les ontologies légères Présentation de la famille de primitives de formalisation proposées par RDFS

RIF RDF and OWL Compatibility (Second Edition)Feb 05, 2013 · A typical scenario for the use of RIF with RDF/OWL is the exchange of rules that use RDF data and/or RDFS or OWL ontologies:

Representing Ontologies Using Description Logics ... · PDF fileRepresenting Ontologies Using Description Logics, Description Graphs, and Rules Boris Motik∗, Bernardo Cuenca Grau,

A protocol for adding knowledge to Wikidata, a case report · Figur e 2 : Example of RDF data model representing ACE2, created with RDFShape (31) . Wikidata’s RDF model offers a

Ontologies Ontop Databases - SWAT4LS€¦ · -ontop- is a platform to query databases as virtual RDF Graphs using SPARQL, and exploiting OWL 2 QL ontologies and mappings It is currently

Learning Ontologies from RDF Annotations

RDF and RDF Schema - polito.it · A common language for describing resources •Resource Description Framework (RDF) –a language for representing information about resources –in

Recognizing, Naming and Exploring Structure in RDF Datapassing/publications/masters-thesis.pdfAbstract The Resource Description Framework (RDF) is the de facto standard for representing

Ontologies for representing, integrating and analyzing phenotypes

Practical RDF Chapter 12. Ontologies: RDF Business Models Shelley Powers, O’Reilly SNU IDB Lab. Taikyoung Kim

Database Integration toward Semantic Web: Development of Ontologies and RDF databases

Representing and Reasoning with Modular Ontologies (2007)

SEMAINE 04 : ontologies et schémas RDFSSEMAINE 04 : ontologies et schémas RDFS 1. Introduction aux ontologies 2. Schémas pour et par RDF 3. Hiérarchies de classes 4. Hiérarchies

Cap. 4. Comunicação entre agentes, Linguagens e ...pauloac/ct220/ct220_cap4_p1.pdf · Ontologies An ontology may be described in languages like OWL, RDF,RDF/S and others Others

Les ontologies et les graphes RDF

September 16, 2009 NEMO OWL ontologies: Viewing & editing OWL/RDF files, part II

Representing addiction in Mental Functioning and Disease ontologies

Representing and Reasoning with Modular Ontologies

COMPASS-CP: An interoperable SMART on FHIR application · – Open architectures and APIs (REST, JSON LD) – Semantic Interoperability (ontologies, RDF representations) – Standards

Representing Translations on the Semantic Webceur-ws.org/Vol-775/paper3.pdf · leaving the original ontologies or data sources untouched. It also contributes to the linking of ontologies

Approximate querying of RDF graphs via path alignment › ~maccioni › files › dapd2014.pdf · graph Q representing the query and a very large graph G representing the database

Querying RDF with SPARQL - Vrije Universiteit Amsterdamwebkr.cs.vu.nl/slides/sparql.pdf · Reminder: what is RDF? RDF: graph-based model for representing (meta)data describe properties

September 2, 2009 NEMO OWL ontologies: Viewing & editing NEMO ontologies (OWL/RDF files)

RDF Resource Description Framework - polito.itelite.polito.it/files/courses/01LHV/2009/2-RDF.pdfThe Resource Description Framework (RDF) is a language for representing information

Semantic Web and RDF Ontologies Mehmet Aktas Marlon Pierce Indiana University

Representing Agent Contracts with Exceptions using …Representing Agent Contracts with Exceptions using XML Rules, Ontologies, and Process Descriptions Benjamin 2N. Grosof1 and Terrence

Representing, Querying and Transforming Social Networks with RDF

RDF Schema pour les ontologies légèresfurst/docs/3-RDFS_OWL.pdf · – SPARQL: un langage de requête sur les graphes RDF – RDFS est un langage de déclarations et descriptions

RDF(S) - SPARQL - Stockage · Ontologies, RDF, SPARQL, RDF-S Ontologie ensembledeconnaissances ... RDF(S) - SPARQL - Stockage RDF RDF : graphes pour le Web sémantique StandardduW3C

Ontologies in RDF-S/OWL

Integrating Ontologies and Thesauri to Build RDF Schemascedric.cnam.fr/fichiers/RC15.pdfIntegrating Ontologies and Thesauri to Build RDF Schemas B. Amann Cedric CNAM, 292 Rue St. Martin

Detecting, Measuring and Representing Vagueness in Ontologies