noise simulation in x-ray ct › portals › 0 › images › erl › posters... · 2014-06-27 ·...

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Noise Simulation in X-ray CT Parinaz Massoumzadeh, Orville A. Earl, and Bruce R. Whiting Mallinckrodt Institute of Radiology, Washington University, St. Louis, MO 6. Acknowledgements Financial support for this research was provided by the Electronic Radiology Lab of the Mallinckrodt Institute of Radiology, and grants from the NIH (NIH/NCI R21 CA95408 (PI BR Whiting) and 2R01CA075371-05A1 (PI: JF Williamson). We gratefully acknowledge the comments and image observations of Dr. Steven Don, as well as the technical assistance from Siemens Medical Systems. 1. Introduction Clinical usage of CT continues to increase, with higher performance of new technical designs enabling a wider variety of clinical applications. While the benefits of diagnostic imaging for the patient are compelling, concerns have been voiced about the risk of radiation dose incurred with examinations, particularly for pediatric or general screening procedures[1]. A prudent approach that has been recommended is the “ALARA” principle, i.e., “as low as reasonably achievable”. Defining such a dose protocol involves the tradeoff between diagnostic information in the image versus the risk of radiation to the patient. While methodologies exist to determine diagnostic performance as a function of image quality, they entail significant ethical and economic issues, and to date have not been systematically applied to establish daily clinical procedures. Several groups have proposed using dose reduction simulations to accomplish this goal, adding synthetic noise to a real clinical scan to produce images that represent what a lower technique would look like[2-4]. Encouraging preliminary results have been reported; we present an update on our efforts in this area. Our study of noise statistics [5-6] in CT measurements led us to develop a more accurate model of CT scanner systems (Fig. 1-6). We report on the validation of this model and its use in dose reduction simulation experiments. Studies with this tool can address interesting questions: How sensitive are observers to changes in noise levels? Potentially, how much can dose be reduced from current practice without compromising diagnostic performance? Fig. 5- Scan of open gantry reveals nonuniform noise profile, implying nonuniform flux in fan beam, due to bowtie filter and x-ray tube “heel effect”. The profile can be fit with polynomial. Fig. 6- Analysis of measurements with flux profile gives linear relationship. Intercept is interpreted as electronic “system” noise. Fig. 3- Histogram analysis of sinogram data provides signal probability distribution functions (pdf). Fig. 4- Plot of variance vs. transmittance reveals unexpected nonlinear dependence (with negative intercept!). Fig. 1-Raw data (sinograms) were collected from phantom objects with simple geometries. Fig. 2-Sinogram data was fit to known profile (“truth”) and measurement deviations were collected. 2. Simulation Model () - + - = 1 1 1 1 ) , ( ) , , ( 2 0 2 α α α K d g Q d p d g v a A series of measurements were performed on clinical CT scanners manufactured by Siemens Medical Systems, including a single row helical scanner (Plus 4), four-row-detector scanner (Volume Zoom), and 16-row-detector scanner (Sensation 16). Air scans provided the fan beam profile and cylinder scans provided signal scaling and system noise parameters. The amount of random noise variance that must be added to an existing measurement to simulate lower dose is given by: 2. Simulation Model (ctd.) Here, α is the dose reduction fraction, d is the channel index, g is the gantry step index, p is the bowtie filter profile (<1), Q o is quanta flux, and K is the system noise. The methodology was validated by comparing measurements on phantom objects with simulations derived from high dose scans of the object. Fig. 9 - (a) Reconstructed image from scan of cylinder with higher-dose (720 CmAs) setting. (b) Reconstructed image from scan of cylinder with lower-dose (150 CmAs) setting. (c) Simulated lower-dose image obtained (by injecting Gaussian noise into the higher-dose scan) assuming no bowtie filter and ignoring the noise floor (K=0). (d) Simulated low-dose image obtained accounting for the measured bowtie filter and ignoring the noise floor (K=0). (e) Simulated low-dose image obtained assuming no bowtie filter and accounting for the noise floor (K=1068). (f) Simulated low- dose image obtained accounting for the measured bowtie filter and accounting for the noise floor (K=1068) The effects of the various parameters in the simulation model can be seen in the following illustrations. The bowtie filter creates a nonuniform distribution of noise, with variance increasing away from the isocenter. In the simulation below (thorax scan from Sensation 16), reconstructed images with and without a bowtie profile are shown. The bowtie profile is necessary to create the higher noise levels of the chest walls compared to the lung lumen. Our measurements indicate that electronic system noise can be a significant effect in some of the older scanner systems, creating increased noise in high attenuation areas. In the scans of a cylinder phantom on a single row scanner, inclusion of excess noise is necessary to match measured low dose images (Fig. 9). Fig. 7-: Above, image simulation without and without bowtie filter; measured variance in regions 3 and 4 differ by <4%, but region 1 differs by >21% and region 2 by >57%. Fig. 8-: Below, left: simulated sinograms; right: plots of measured sinogram variance. Without Bowtie With Bowtie 3. Simulation Validation 5. References 1.Kalra, M.K., et al., Radiation exposure and projected risks with multidetector-row computed tomography scanning: clinical strategies and technologic developments for dose reduction. J Comput Assist Tomogr, 2004. 28 Suppl 1: p. S46-9. 2.Mayo, J.R., et al., Simulated dose reduction in conventional chest CT: validation study. Radiology, 1997. 202(2): p. 453-7. 3.Frush, D.P., et al., Computer-simulated radiation dose reduction for abdominal multidetector CT of pediatric patients. AJR Am J Roentgenol, 2002. 179(5): p. 1107-13. 4.Britten, A.J., et al., The addition of computer simulated noise to investigate radiation dose and image quality in images with spatial correlation of statistical noise: an example application to X-ray CT of the brain. Br J Radiol, 2004. 77(916): p. 323-8. 5.Whiting, B.R., Signal statistics in x-ray computed tomography. SPIE Medical Imaging 2002, 2002. 4682: p. 53-60. 6.Whiting, B., et al., X-ray CT Signal Statistics, AAPM Annual Meeting. 2004: Pittsburgh. p. 1687. To obtain the best parameters for the synthesis of simulated low- dose sinograms from high dose scans, a cost function of the mean squared error between the weighted (relative) variances was defined, and “fminsearch” in Matlab was used to optimize the values for the dose reduction fraction () and system electronic noise (K). Good agreement between the computed flux from high dose (500 mA) to other dose levels (300, 150, and 50 mA) is shown in Fig. 10. Fig. 12 indicates the significance of including the bowtie filter and system noise in simulations in a single row helical scanner, i.e., the best fit and the worst fit are obtained with and without bowtie filter and background noise, respectively. Fig. 13 also shows similar results in Sensation 16; the optimum values obtained for and K were 0.1088 and 0.9286, respectively. Note, here the dose reduction fraction value (0.1088) is in very good agreement with actual ratio of tube currents (0.1), and the electronic system noise in the 16-row system has a very small effect. Fig. 10 - Incident flux level in four different dose levels (500, 300, 150, and 50 mA) of air scan in Sensation 16. Fig. 11 - Sinogram of 50 mA and simulated 500 to 50 mA of air scan in Sensation 16. Fig. 12 - Weighted variance of high (420 mAs) and low (50 mAs) dose sinograms and simulated sinograms for 35 cm cylinder phantom in Plus 4: (i) with bowtie filter and background noise, (ii) without bowtie filter and with background noise, and (iii) without bowtie filter and background noise. Fig. 13 – Variance of high (500 mA) and low (50 mA) dose sinograms and simulated sinogram for cylinder phantom in Sensation 16. 4. Observer Studies Fig. 15- A series of simulated dose reduction images was created and presented to a radiologist observer for assessment of comfort level with image quality for diagnosis. In the pediatric case below, containing a metastasis (red arrow), a reduction in dose of 70% (45mAs) was deemed acceptable. Studies for the potential for protocols reducing dose are underway. 60mAs (simulated) 150mAs 52.5 mAs (simulated) 48.75 mAs (simulated) 41.25 mAs (simulated) 45 mAs (simulated) We have begun to apply this simulation tool to observer studies in several clinical areas, with some examples shown in Fig. 14-15. We believe that this methodology will be very useful to probe observer performance and establish CT protocols to reduce radiation risk. Fig. 14- A 4AFC image set, with upper right image having 20% less dose. This study will establish just noticeable difference levels for CT noise and determine sensitivity to changes in noise level.

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Page 1: Noise Simulation in X-ray CT › Portals › 0 › Images › ERL › Posters... · 2014-06-27 · bowtie filter and x-ray tube “heel effect”. The profile can be fit with polynomial

Noise Simulation in X-ray CTParinaz Massoumzadeh, Orville A. Earl, and Bruce R. Whiting

Mallinckrodt Institute of Radiology, Washington University, St. Louis, MO

6. AcknowledgementsFinancial support for this research was provided by the Electronic Radiology Lab of the Mallinckrodt Institute of Radiology, and grants from the NIH (NIH/NCI R21 CA95408 (PI BR Whiting) and 2R01CA075371-05A1 (PI: JF Williamson). We gratefully acknowledge the comments and image observations of Dr. Steven Don, as well as the technical assistance from Siemens Medical Systems.

1. Introduction

Clinical usage of CT continues to increase, with higher performance of new technical designs enabling a wider variety ofclinical applications. While the benefits of diagnostic imaging for the patient are compelling, concerns have been voiced about the risk of radiation dose incurred with examinations, particularly for pediatric or general screening procedures[1]. A prudent approach that has been recommended is the “ALARA” principle, i.e., “as low as reasonably achievable”. Defining such a dose protocol involves the tradeoff between diagnostic information in the image versus the risk of radiation to the patient. While methodologies exist to determine diagnostic performance as a function of imagequality, they entail significant ethical and economic issues, and to date have not been systematically applied to establish daily clinical procedures. Several groups have proposed using dose reduction simulations to accomplish this goal, adding synthetic noise to a real clinical scan to produce images that represent what a lower technique would look like[2-4]. Encouraging preliminary results have been reported; we present an update on our efforts in this area.

Our study of noise statistics [5-6] in CT measurements led us to develop a more accurate model of CT scanner systems (Fig. 1-6). We report on the validation of this model and its use in dose reduction simulation experiments. Studies with this tool can address interesting questions: How sensitive are observers to changes in noise levels? Potentially, how much can dose be reduced from current practice without compromising diagnostic performance?

Fig. 5- Scan of open gantry reveals nonuniform noise profile, implying nonuniform flux in fan beam, due to bowtie filter and x-ray tube “heel effect”. The profile can be fit with polynomial.

Fig. 6- Analysis of measurements with flux profile gives linear relationship. Intercept is interpreted as electronic “system” noise.

Fig. 3- Histogram analysis of sinogram data provides signal probability distribution

functions (pdf).

Fig. 4- Plot of variance vs. transmittance reveals unexpected nonlinear dependence (with negative intercept!).

Fig. 1-Raw data (sinograms) were collected from phantom objects with simple geometries.

Fig. 2-Sinogram data was fit to known profile (“truth”) and measurement deviations were collected.

2. Simulation Model

( ) ��

���

� −+��

���

� −= 11

11

),(),,( 202

ααα KdgQdpdgva

A series of measurements were performed on clinical CT scanners manufactured by Siemens Medical Systems, including a single row helical scanner (Plus 4), four-row-detector scanner (Volume Zoom), and 16-row-detector scanner (Sensation 16). Air scans provided the fan beam profile and cylinder scans provided signal scaling and system noise parameters. The amountof random noise variance that must be added to an existing measurement to simulate lower dose is given by:

2. Simulation Model (ctd.)

Here, α is the dose reduction fraction, d is the channel index, g is the gantry step index, p is the bowtie filter profile (<1), Qo is quanta flux, and K is the system noise. The methodology was validated by comparing measurements on phantom objects with simulations derived from high dose scans of the object.

Fig. 9 - (a) Reconstructed image from scan of cylinder with higher-dose (720 CmAs) setting. (b) Reconstructed image from scan of cylinder with lower-dose (150 CmAs) setting. (c) Simulated lower-dose image obtained (by injecting Gaussian noise into the higher-dose scan) assuming no bowtie filter and ignoring the noise floor (K=0). (d) Simulated low-dose image obtained accounting for the measured bowtie filter and ignoring the noise floor (K=0). (e) Simulated low-dose image obtained assuming no bowtie filter and accounting for the noise floor (K=1068). (f) Simulated low-dose image obtained accounting for the measured bowtie filter and accounting for the noise floor (K=1068)

The effects of the various parameters in the simulation model can be seen in the following illustrations. The bowtie filter creates a nonuniform distribution of noise, with variance increasing away from the isocenter. In the simulation below (thorax scan from Sensation 16), reconstructed images with and without a bowtie profile are shown. The bowtie profile is necessary to create the higher noise levels of the chest walls compared to the lung lumen.

Our measurements indicate that electronic system noise can be a significant effect in some of the older scanner systems, creating increased noise in high attenuation areas. In the scans of a cylinder phantom on a single row scanner, inclusion of excess noise is necessary to match measured low dose images (Fig. 9).

Fig. 7-: Above, image simulation without and without bowtie filter; measured variance in regions 3 and 4 differ by <4%, but region 1 differs by >21% and region 2 by >57%.

Fig. 8-: Below, left: simulated sinograms; right: plots of measured sinogram variance.

Without Bowtie With Bowtie

3. Simulation Validation

5. References

1.Kalra, M.K., et al., Radiation exposure and projected risks with multidetector-row computed tomography scanning: clinical strategies and technologic developments for dose reduction.J Comput Assist Tomogr, 2004. 28 Suppl 1: p. S46-9.

2.Mayo, J.R., et al., Simulated dose reduction in conventional chest CT: validation study.Radiology, 1997. 202(2): p. 453-7.

3.Frush, D.P., et al., Computer-simulated radiation dose reduction for abdominal multidetectorCT of pediatric patients. AJR Am J Roentgenol, 2002. 179(5): p. 1107-13.

4.Britten, A.J., et al., The addition of computer simulated noise to investigate radiation dose and image quality in images with spatial correlation of statistical noise: an example application to X-ray CT of the brain. Br J Radiol, 2004. 77(916): p. 323-8.

5.Whiting, B.R., Signal statistics in x-ray computed tomography. SPIE Medical Imaging 2002, 2002. 4682: p. 53-60.

6.Whiting, B., et al., X-ray CT Signal Statistics, AAPM Annual Meeting. 2004: Pittsburgh. p. 1687.

To obtain the best parameters for the synthesis of simulated low-dose sinograms from high dose scans, a cost function of the meansquared error between the weighted (relative) variances was defined, and “fminsearch” in Matlab was used to optimize the values for the dose reduction fraction (�) and system electronic noise (K).

Good agreement between the computed flux from high dose (500 mA) to other dose levels (300, 150, and 50 mA) is shown in Fig. 10. Fig. 12 indicates the significance of including the bowtie filter and system noise in simulations in a single row helical scanner, i.e., the best fit and the worst fit are obtained with and without bowtie filter and background noise, respectively. Fig. 13 also shows similar results in Sensation 16; the optimum values obtained for � and K were 0.1088 and 0.9286, respectively. Note, here the dose reduction fraction value (0.1088) is in very good agreement with actual ratio of tube currents (0.1), and the electronic system noise in the 16-row system has a very small effect.

Fig. 10 - Incident flux level in four different dose levels (500, 300, 150, and 50 mA)

of air scan in Sensation 16.

Fig. 11 - Sinogram of 50 mAand simulated 500 to 50 mAof air scan in Sensation 16.

Fig. 12 - Weighted variance of high (420 mAs) and low (50 mAs) dose sinograms and simulated sinograms for 35 cm cylinder phantom in Plus 4: (i) with bowtie filter and background noise, (ii) without bowtie filter and with background noise, and (iii) without bowtie filter and background noise.

Fig. 13 – Variance of high (500 mA) and low (50 mA) dose sinograms and simulated sinogram for cylinder phantom in Sensation 16.

4. Observer Studies

Fig. 15- A series of simulated dose reduction images was created and presented to a radiologist observer for assessment of comfort level with image quality for diagnosis. In the pediatric case below, containing a metastasis (red arrow), a reduction in dose of 70% (45mAs) was deemed acceptable. Studies for the potential for protocols reducing dose are underway.

60mAs (simulated) 150mAs

52.5 mAs (simulated)48.75 mAs (simulated)

41.25 mAs (simulated) 45 mAs (simulated)

We have begun to apply this simulation tool to observer studies in several clinical areas, with some examples shown in Fig. 14-15. We believe that this methodology will be very useful to probe observer performance and establish CT protocols to reduce radiation risk.

Fig. 14- A 4AFC image set, with upper right image having 20% less dose. This study will establish just noticeable difference levels for CT noise and determine sensitivity to changes in noise level.