page 1 ao microscopy of biological systems slides thanks to prof. joel kubby, ee at ucsc
TRANSCRIPT
Page 1
AO Microscopy of Biological AO Microscopy of Biological SystemsSystems
• Slides thanks to Prof. Joel Kubby, EE at UCSC
Page 2
Wide-Field AO Correction of Green Fluorescent Sample Beads
AO Off AO On
Drosophila Embryo
Oscar Azucena, UCSC
Page 5
Wavefront Aberrations in Microscopy
Point Source
WavefrontAberration
n
Objective Lens
Point Source
WavefrontAberration
n
Point Source
WavefrontAberration
n
Objective Lens
Wavefront aberrations due to a change in a sample’s refractive
index δn
Page 6
Fluorescent Protein Guide-Stars
GFP-labeled centrosomes for biological guide-stars in adaptive optic microscopy
Prof. Roy, McGill University
Page 7
Centrosome
Kinetochore
Chromosome
Guide-star Proteins can be Located in the Mitotic Apparatus
Page 10
Confocal Images of GFP Labeled Tubulin in Drosophila Embryos
Surface 30 μm below the surface
Prof. William Sullivan, UCSC MCD Biology
Page 12
Injection of Fluorescent BeadReference Beacons in Drosophila Embryo
1 μm crimson beads
Oscar Azucena, UCSC
Page 13
Wide-Field AO Correction of Crimson Reference Beacon
Uncorrected image of a
bead
40% correction
The length of the bar is equal to the diffraction limit
of the 40X (0.75 NA) objective lens, 0.45 µm.
10X improvement in relative Strehl ratio
Correction of 1 μm microsphere 100 μm beneath surface embryo
Oscar Azucena, UCSC
Page 14
Wide-Field AO Correction of 1 μm Green Sample Beads
AO Off AO On
Drosophila Embryo
Oscar Azucena, UCSC
Page 16
AO 2P Microscope
PMT
Wavefront sensor DB1 DB2 DB3
F1
L1
L2
L4 L5
L6
L7
Deformable Mirror
X Scanner
Tube Lens
Ti:Sapphire Laser 700nm – 1100nm Tunable
Helium Neon Laser(633nm)
Y Scanner
F2
Xiaodong Tao, UCSC
Page 17
Wavefront measurements from a 1 μm fluorescent microsphere through 100 μm thick brain tissue
Xiaodong Tao, UCSC
0
5
10
0
5
10-1.5
-1
-0.5
0
0.5
1
1.5
-1
-0.5
0
0.5
1
0
5
10
0
5
10-1.5
-1
-0.5
0
0.5
1
1.5
-0.06
-0.04
-0.02
0
0.02
0.04
RMS=0.52λ RMS=0.028λλ λ
(a) (b)
(d)(c)
0
50
100
150
200
10 20 30 40 50
5
10
15
20
25
30
35
40
45
50
55 0
50
100
150
200
Page 18
Confocal Images of Mouse Brain Tissue
0
500
1000
1500
2000
2500
3000
0
2000
4000
6000
8000
0
2000
4000
6000
8000
10000
0
2000
4000
6000
8000
10000
12000
14000
0
0.5
1
1.5
2
2.5
x 104
0
0.5
1
1.5
2
2.5
3
x 104
0 10 20 30 40 50 600
2000
4000
6000
8000
10000
12000
Pixel
Inte
nsity
(c)
(f)
0 5 10 15 20 25 30 35 40 450
0.5
1
1.5
2x 10
4
0 10 20 30 40 50 60 700
2000
4000
6000
8000
Pixel
Inte
nsity
Pixel
Inte
nsity
(i)
With AOWithout AO
With AOWithout AO
With AOWithout AO
(a) (b)
(d) (e)
(g) (h)
AO Off AO On
15 μm
50 μm
100 μm
Xiaodong Tao, UCSC
Page 20
Drosophila Embryo
(a) (b)
PSFPSF
The images and PSF without (a) and with (b) correction for a cycle 14 fruit fly embryo with GFP-polo at the depth of 83 μm. Scale bars, 2 µm
Before correction After correction
Cannot see the centrosomes Can see the centrosomes
Xiaodong Tao, UCSC
Depth: 83 μm
Page 21
0.02
0.04
0.06
0.08
0.1
0.02
0.04
0.06
0.08
0.02
0.04
0.06
0.08
0.1
0.12
0.14
0.05
0.1
0.15
0.05
0.1
0.15
0.02
0.04
0.06
0.08
0.1
-0.3
-0.2
-0.1
0
0.1
0.2
0.3
5 6 7 8 9 10 11 12 13 14 15
P 1 P 2 P 3 P 4
Zern
ike
coeffi
cien
t val
ue(m
icro
ns)
Zernike coefficient index
f
-1
0
1
-1
0
1
2
-1
0
1
2
-2
-1
0
1
2
b c d e
g h
a
Confocal imagingWavefront measurement Open loop control
Objective
Control system
Spatial filter
M1
M2
DB
Deformable mirror
Excitation Laser
Reference Laser
X-Y scanner
Objective
0.02
0.04
0.06
0.08
0.02
0.04
0.06
0.08
0.1
0.12
0.14
PSFPSF
Page 24
Conclusions
• Fluorescent proteins can be used as reference beacons for wavefront measurements in adaptive optics
• Improve relative Strehl ratio in 20 μm thick Drosophila embryo by up to 10x
• Improve relative Strehl ratio in 100 μm thick mouse brain tissue imaged by AO confocal microscope by up to 4.7x
• Currently imaging GFP (Drosophila) and YFP (mouse brain tissue) labeled samples
• Extending Measurements to Live Imaging
Page 25
Problems with Indirect Approachesto AO in Biological Imaging
• Too slow for live imaging
• Photo-toxicity and photo-bleaching of sample
• Information can be lost
Page 26
Phase Stepping Interferometry
M. Schwertner, M. J. Booth, M. A. A. Neil, T. Wilson, Measurement of specimen-induced aberrations of biological samples using phase stepping interferometry, Journal of Microscopy Volume 213, Issue 1, pp. 11–19 (2004)
Page 27
Aberrations in Biological Specimens
Mouse brain Mouse ooctye Mouse liver
Mouse heart muscle c. elegans Mouse smooth muscle
Martin J. Booth, Michael Schwertner and Tony Wilson
Page 28
-1
-0.8
-0.6
-0.4
-0.2
0
0.2
0.4
0.6
0.8
1
-1
-0.8
-0.6
-0.4
-0.2
0
0.2
0.4
0.6
0.8
1m m
Thickness = 50 μm Thickness = 200 μm
Peak-Valley: 2 μm
Aberrations in Brain Tissue
1.0
0.80.60.40.20.0
-0.8
-0.6
-0.4
-0.2
-1.0
1.0
0.80.60.40.20.0
-0.8
-0.6
-0.4
-0.2
-1.0
Xiaodong Tao, UCSC
Page 29
4 6 8 10 12 14 16 18 20 22 24-0.25
-0.2
-0.15
-0.1
-0.05
0
0.05
4 6 8 10 12 14 16 18 20 22 24-0.25
-0.2
-0.15
-0.1
-0.05
0
0.05
4 6 8 10 12 14 16 18 20 22 24-0.25
-0.2
-0.15
-0.1
-0.05
0
0.05
4 6 8 10 12 14 16 18 20 22 24-0.25
-0.2
-0.15
-0.1
-0.05
0
0.05
4 6 8 10 12 14 16 18 20 22 24-0.25
-0.2
-0.15
-0.1
-0.05
0
0.05
4 6 8 10 12 14 16 18 20 22 24-0.25
-0.2
-0.15
-0.1
-0.05
0
0.05
Thickness = 30 μm Thickness = 50 μm Thickness = 80 μm
Thickness = 100 μm Thickness = 150 μm Thickness = 200 μm
4 6 8 10 12 14 16 18 20 22 24
4 6 8 10 12 14 16 18 20 22 24
4 6 8 10 12 14 16 18 20 22 24
4 6 8 10 12 14 16 18 20 22 24
4 6 8 10 12 14 16 18 20 22 24
4 6 8 10 12 14 16 18 20 22 24
Aberrations in Brain Tissue
0.05
0.00
-0.05
-0.10
-0.15
-0.20
-0.25
0.05
0.00
-0.05
-0.10
-0.15
-0.20
-0.25
0.05
0.00
-0.05
-0.10
-0.15
-0.20
-0.25
0.05
0.00
-0.05
-0.10
-0.15
-0.20
-0.25
0.05
0.00
-0.05
-0.10
-0.15
-0.20
-0.25
0.05
0.00
-0.05
-0.10
-0.15
-0.20
-0.25
μm
μm
μm
μm
μm
μm
#
#
Xiaodong Tao, UCSC
Spherical aberration increases with depth