parp7 negatively regulates the type i interferon response ... · tumor-derived interferon is key...
TRANSCRIPT
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• JoeGozgit• RibonTherapeutics
PARP7NegativelyRegulatestheTypeIInterferonResponseinCancerCellsanditsInhibitionLeadstoTumorRegression
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Disclosure Statement
• IamanemployeeandshareholderofRibonTherapeutics
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Not All PARPs Are Alike – Outside of PolyPARPs the PARP Family Is Unexplored for Therapeutic Development
• PARPfamilyconsistsof17members• Threesubfamiliesbasedoncatalyticactivity(polyPARPs,monoPARPsandinactive)
• PARPsregulatetheircellularfunctionbymodifyingtargetproteinswithADP-ribose
• monoPARPstransferasingleunitofADP-riboseontotheirsubstrateswherepolyPARPsattachpolymersofADP-riboseunits
• PARP7isamonoPARP• Targetgeneofthearylhydrocarbonreceptor(AHR)thatcanbeinducedbycancerrelevantstresses(e.g.chemicalsincigarettesmoke)
• Genelocusisamplifiedincancerswithstrongsmokingassociation(e.g.,squamouscellcarcinomaofthelung(SCCL),esophagealandheadandnecksquamouscancers)
Vyas,Changet.al.NatureComm.2013
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PARP7isfrequentlyamplifiedincancer
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AberrantnucleicacidscanbedetectedbyvarioussensingmechanismsincludingcGAS/STINGandRIG-I
PARP7 Acts as a Brake in Cytosolic Nucleic Acid Sensing and the Type I Interferon (IFN) Response
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TypeIIFNsignalingplaysakeyroleinantitumorimmunitybyinducingbothinnateandadaptive
immunemechanisms
Zitvogel-NatureRevCancer-2015
• Hypothesis:HighlevelsofPARP7intumorsblocksinterferonproductionresultinginanimmunosuppressiveenvironment
• Targetinganegativeregulator“brake”ofTypeIIFNsignalingisanoveltherapeuticstrategyincancer
PARP7hasbeenreportedtonegativelyregulatetheTypeIresponsebyinteractingwithTBK1duringviralinfection
(Yamada-NatImmunol-2016)
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RBN-2397 is a Potent and Selective Inhibitor of PARP7
• RBN-2397isapotentinhibitorofPARP7• BindstoPARP7intheNAD+bindingpocketwithkeyinteractionsinadenosinesub-pocketdrivingpotencyandselectivity
• Sub-nanomolarbiochemicalactivity• PotentinhibitionofcellularMARylation
• RBN-2397displaysselectivitytoPARP7• >50-foldselectivevs.PARPfamily• Noinhibitioninkinasepanel(1µM)
• Drug-likepropertiessupportoraldosinginhumans
• FirstinhumanPhaseImulti-centerclinicaltrialisunderway(NCT04053673)
StructureofRBN-2397
Co-crystalstructureofRBN-2397boundtoPARP12/7
PARP12wasusedasasurrogateforPARP7.FourlabeledresiduesweremutatedfromPARP12tomatchthePARP7sequence.
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RBN-2397 Restores Cytosolic Nucleic Acid Sensing in the Mouse CT26 Cancer Cell Line
0.1 1 10 100 10000
10
20
30
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RBN-2397 (nmol/L)
Cxc
l10
mR
NA
Lev
els
(fol
d c
hang
e)
InductionofCXCL10mRNA
RBN-2397restoresTypeIIFNresponseinCT26cells
InductionofpSTAT1
• RestorationofTypeIIFNresponseismeasuredbyanincreaseinSTAT1phosphorylationandinterferonstimulatedgenes(ISGs)
PARP7inhibition“releasesthebrake”oncytosolicnucleicacidsensingandinducesTypeIIFNs
e.g.CXCL10
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RBN-2397 Induces Tumor-Specific Adaptive Immune Memory in CT26 Syngeneic Model with Durable Complete Responses
CT26re-challenge 4T1re-challenge
• OncedailyoraldosingofRBN-2397inCT26tumor-bearingBALB/cmice
• Tumor-freemiceweremonitoredfor60days
• Tumor-freemicere-challengedwithCT26andsubsequently4T1cells
• Alltumor-freemicerejectedCT26cellsbutnot4T1,demonstratinginductionoftumor-specificadaptiveimmunememory
PrimaryEfficacy:RBN-2397inducesdurableregressions Re-challengeoftumor-freemice:RejectionofCT26cells
TF:TumorfreemiceAllgroupsco-dosedwithABT
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Time (d)
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m3 )
0 20 40 60 80 100 1200
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3000RBN-2397 3 mg/kg
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or v
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m3 )
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5 TF4 TF
Dosing period Dosing period Dosing period
Dosing period Dosing period
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RBN-2397 Induces Type I IFN Signaling and Enhances Immune Markers in CT26 Tumors
Increase in GrzB on CD8 T cells
RBN-2397showsexposure-dependenteffectsonPDmarkersinCT26tumors
RBN-2397enhancesantigenpresentationandTcellactivationintumor-infiltratingimmunecells
IncreaseinMHCIIonDC1cells IncreaseinCD86onDC1cells
Vehicl
e
Vehicl
e + A
H1
RBN-2397
RBN-2397
+ AH1
0
100
200
300
400
IFN
-g s
pots
/5x1
04 cel
ls P = 0.0326
Vehicle RBN-2397 4000
5000
6000
7000
8000
CD
86 M
FI D
ay 3
(on
DC
1 ce
lls)
P = 0.0064
Vehicle RBN-2397 0
20000
40000
60000
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100000
GZM
B M
FI D
ay 1
2(o
n C
D8+
cel
ls)
P < 0.0001
Vehicle RBN-2397 0
50000
100000
150000
200000
MH
CII
MFI
Day
3(o
n D
C1
cells
)
P = 0.0243
RBN-2397increasestumorantigen-specificTcells:IncreaseinthenumberofsplenicTcellsproducingIFN-γin
responsetotheCT26antigen
CT26tumor-bearingmiceadministeredassingleoraldose.
CT26tumor-bearingmicedosedwithRBN-2397100mg/kg+ABTfor15Days.
CT26tumor-bearingmicedosedwithRBN-2397500mg/kg.Tumorscollectedondays3,6&12.
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Combination of Anti-PD1 with RBN-2397 Increases the Number of Tumor-Free Mice in the CT26 Syngeneic Model
Vehicle RBN-2397 0
20
40
60
80
LAG
3+ c
ells
Day
12
(% in
CD
8+ g
ate)
P < 0.0001
Vehicle RBN-2397 0
50
100
150
PD-L
1 M
FI D
ay 1
2(o
n F4
/80+
mac
roph
ages
) P < 0.0008
IncreaseinmarkersofimmunefeedbackregulationfollowingtreatmentwithRBN-2397inCT26
Enhancedantitumorimmunitywithcombinationwithanti-PD1inCT26
IncreaseinPD-L1onmacrophages
IncreaseinLAG3onCD8Tcells
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RBN-2397 (30 mg/kg) +Anti-PD1 (5 mg/kg)
Time (d)
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9TF
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CRISPR-Cas9 Used to Ablate either TBK1 or IFNAR1 in CT26 Cells to Investigate the Mechanism of Action of RBN-2397
ModelofPARP7insuppressingTypeIIFNsignaling
• TBK1knockout(KO)preventsbothIRF3&STAT1phosphorylationbyRBN-2397• IFNAR1KOpreventsSTAT1phosphorylationbyRBN-2397
TBK1KO
X
IFNAR1KO
TBK1KO
X
Tumorcells
CT26WTandKOcellstreatedwithRBN-2397
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Tumor-derived Interferon Is Key for Antitumor Activity of RBN-2397
• AblationoftumorTBK1nearlyeliminatestheantitumoractivityofRBN-2397intheCT26tumormodel
• Tumor-derivedIFN-βisthesourceoftheinnateimmuneactivationandcrucialforRBN-2397mediatedantitumorresponse
Allgroupsco-dosedwithABTDONOTPOST
• NoPARP7i-mediatedIFN-βrelease• Noeffectsoncancerorimmunecells
X
Tumorcell
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• IFNAR1KOinitiallyattenuatesantitumoractivityofRBN-2397,butasubsetoftumorsstartrespondingafterDay12
• IFNAR1KOdoesnotpreventIRF3phosphorylationbyRBN-2397• SuggestsonsetofantitumorimmunityaroundDay12,induced
byeffectsoftumor-derivedIFN-βonimmunecells
IFNAR1 Knockout in CT26 Tumor Cells Partially Attenuates Antitumor Activity of RBN-2397 in the CT26 Tumor Model
0 4 8 12 16 20 24 28 32 36 400
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(mm
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RBN-2397 100 mg/kg
Allgroupsco-dosedwithABT
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• NoISGs• Notumorintrinsiceffect
• Immuneresponse
Tumorcells
Immunecell
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• Dosingofanti-IFNAR1ABonthebackgroundofCT26IFNAR1KOtumorspreventstheantitumoractivityofRBN-2397
• SuggestscontributionofimmunesystemthroughactivationofIFN-βsignalinginimmunecells
• Tumor-producedTypeIIFNbyRBN-2397playsamajorroleinthedevelopmentofdurableantitumorimmunity
Allgroupsco-dosedwithABT
IFNAR1 Blockade on Tumor and Immune Cells Is Necessary to Prevent Antitumor Activity of RBN-2397 in the CT26 Tumor Model
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• NoISGs• Notumorintrinsiceffect
• Immuneresponse
Tumorcells
Immunecell
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RBN-2397 Shows Cancer Cell Autonomous Effects and Restores Type I IFN Signaling in Human Cancer Cell Lines
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Eachdotrepresentsacancercellline6dayassay
SubsetofcancercelllinesexhibitdependencyonPARP7forproliferation
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• RespondercelllinesareenrichedforhighexpressionofgenesinvolvedinTypeIIFNresponse
crControl crPARP70.0
0.5
1.0
1.5
Rel
ativ
e C
ell V
iabi
lity
crControlcrPARP7P < 0.0001
RBN-2397inductionofpSTAT1
DependencyonPARP7forproliferationandsuppressionofTypeIIFNsignalinginNSCLCNCI-H1373cells
Proliferation:RBN-2397GI50
Proliferation:PARP7KO
10-5 10-4 10-3 10-2 10-1 100 1010
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RBN-2397 (mM)
Cel
l Gro
wth
(%)
10-5 10-4 10-3 10-2 10-1 100 1010
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RBN-2397 (mM)
Cel
l Gro
wth
(%)
TranscriptionalchangesbyRBN-2397:IncreaseinmultipleISGs
GenesenrichedforTypeIIFN&viralresponse
PARP7inhibitor
PARP1inhibitor
NonsignificantSignificant
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CRISPRi/a Screen Highlights Innate Immune Response Genes in Driving RBN-2397 Activity in NCI-H1373 Cells
SignificantenrichmentofgenesinvolvedininnateimmuneresponsethataffectRBN-2397activity
ComparisonofCRISPRi/aphenotypescoreshighlightsgeneswithopposingfunctionalityuponRBN-2397treatment
GeneticscreenusingwholegenomeCRISPRi/alibraries• CRISPRi:interferencetosilencegeneexpression• CRISPRa:activationtoincreasegeneexpression
EffectsofindividualgenesonRBN-2397activity• Resistancewhensilenced• Sensitivitywhenactivated
GSEAofgenesthataffectRBN-2397activity• Resistancewhensilenced• Sensitivitywhenactivated
GSEA:Genesetenrichmentanalysis
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RBN-2397 Shows Antitumor Activity in Human Cancer Cell Lines that Show Induction of ISGs
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TranscriptomicchangesbyRBN-2397mRNAlevels(log2foldchange)
RBN-2397cellproliferation
ReactivationoftumorTypeIIFNsignalingisamajordeterminantforRBN-2397antitumoractivity
NoincreaseinISGs
IncreaseinISGs
= =
Noantitumoractivity
Antitumoractivity(50-100%TGI)• Lungcancer• Pancreaticcancer• Oralsquamouscancer
RBN-2397efficacyinCB17SCIDxenograftmousemodel(*)
RBN-2397causescompleteregressionsinNCI-H1373xenografts
• OncedailyoraldosingofRBN-2397inCB17SCIDmicewithNCI-H1373xenografts
• Dose-dependenteffectsontumorgrowth• Tumorregressionatdoselevelsof≥30mg/kg
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RBN-2397 – A Novel Cancer Therapeutic Being Tested in Clinical Trials
• DiscoveredfirstpotentandselectivePARP7inhibitor• Novelfirst-in-classtherapy
• PARP7isanoveltherapeutictargetanditsinhibitioninducesbothantitumorimmunityandcancercellautonomouseffects• Increasedsignalingtotheimmunesystem• Developmentofimmunememory• Arrestofcancercellproliferationandtumorregression• AntitumoractivityinmultiplecancertypeswherereactivationofTypeIIFNsignalingisobserved
• IdentifiedPARP7asafundamentalregulatorofintrinsicstresssupportpathwaysandanoveltumorvulnerabilityincancercells
• FirstinhumanPhaseImulti-centerclinicaltrialunderway(NCT04053673)
Completeregressionsandantitumorimmunityasasingleagent
IFNUncloaksthetumorcellsandrecruitsimmunecells
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Acknowledgements
VictoriaRichonAndySantospagoLaurieSchenkelRichardSchroederPrashantShambharkarJeffSongTadStewartKerrenSwingerLukeUtleyZachareniaVarsamisMelissaVasbinderTimWigleJodieWong
RyanAboEllenBambergDanielleBlackwellRichardBushellAnneCheungW.DavidChurchLisaClearyDavidCordoBryanDorseyJenniferDowningJosephGozgitLinetteGreyBinGuiHeikeKeilhackPeterKimDanielleKnightKaikoKunii
TeamRibon:KevinKuntzKristyKuplast-BarrJenkinsLemeraChangLiuAlvinLuAhmedMadyChristinaMajerKristenMcEachernMaeganMikulaElenaMinissaleJasonMoJenniferMolinaSunainaNayakMarioNiepelSudhaParasuramanNicholasPerlYueRen
PaulChangLeeKrausTimothyMitchison
JamesAudiaLarryLaskyPatriciaRao
FoundersandAdvisors:
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