the lifeomic precision health cloud™ is accelerating precision … · 2019-09-16 · machine...

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The LifeOmic Precision Health Cloud™ is Accelerating Precision Medicine and Advancing Clinical Research INTRODUCTION Increasingly vast amounts of patient data and the emergence of cloud computing and machine learning are driving innovation in healthcare. Breakthroughs in genomic sequencing, proteomics, metabolomics and imaging have led to an explosion of information. Healthcare professionals and researchers today need to integrate clinical data with large omic datasets, access and share EHR/EMR data across increasingly interdisciplinary care teams, protect patient privacy, and engage patient acquired data. The LifeOmic Precision Health Cloud TM (PHC) is a secure cloud platform that integrates and indexes disparate sources of data including omic, clinical, imaging and population data. Cloud computing gives us the storage capacity and processing power to absorb, maintain and integrate emerging types patient data types along with structured electronic medical records and real-time telemetry from mobile devices, securely and cost effectively. The PHC provides a long-term solution for organizations facing the challenges that come with exploding health information. Through machine learning, PHC provides actionable insights by uncovering the interrelationships between disparate types of patient data and powers precision treatments. Here we present real-world case studies of how the PHC is accelerating precision health. CASE 1 The PHC Platform Supports Diverse Clinical and Research Applications In 2016, Indiana University established the IU Precision Health Grand Challenge (IUPHGC). Its mission is to radically rethink and operationalize new care and research practices for disease states failed by the traditional health care system. One of the IUPHGC’s core strategies is to provide a comprehensive data/informatics infrastructure tailored to new models of health delivery. SUMMARY The LifeOmic Precision Health Cloud™ has proven to be a versatile and powerful platform for diverse clinical and research applications. To learn more, please write to [email protected]. www.lifeomic.com FEATURES AND CAPABILITIES Integrate large-scale disparate data: • Electronic Medical Records • Omics • Images and audio • Wearable, mobile medical and device streams Standards-based, using FHIR and GA4GH Mobile-native platform to support patient acquired data Ultra-secure with fine-grained access controls REST-based API for multi-level extensibility “Big data” analytics and machine learning APPLICATIONS Disease management/decision support for clinicians Clinical trial management Research cohort building and analytics Secondary genomic pipelines Controlled data sharing Scalable secure storage Wellness programs (fitness groups, corporate incentives, friends and family circles) Population health Patient education THE LIFEOMIC PRECISION HEALTH CLOUD™ A HIPAA-compliant cloud-based platform for large-scale clinical research, clinical trials and healthcare delivery Demographic overview of the first 1,600 cases from IUPHGC’s Adult Precision Genomics disease team on the PHC. Overview and analytical graphs can be configured within PHC’s user interface by project investigators. S e c u r i t y Researchers Medical Records, Omics, etc. Connected devices Wearables Patients Clinicians Ben Salisbury 1 , Paul Biondich 2,3 , Milan Radovich 2,3 , Daniel Robertson 4 , Carolyn E. Banister 5 , Phillip J. Buckhaults 6 , Travis Morgan 7 , Tom Barber 1 1 LifeOmic, Inc., 2 Regenstrief Institute, 3 Indiana University School of Medicine, 4 Indiana Biosciences Research Institute, 5 Delphi Genomics, 6 University of South Carolina , 7 Animated Dynamics, Inc. CASE 2 Data Integration in the PHC Empowers Type 2 Diabetes Patient Analysis One of the goals at the IBRI is to better understand Type 2 Diabetes (T2D), a complex disease with varied underlying genetic, biological and behavioral factors. Using the PHC, the IBRI is able to store and analyze complex longitudinal EHR data for T2D subjects along with mobile data generated by patients. Machine learning algorithms can be applied to that data to better understand T2D, its associated co-morbidities, disease progression and prediction. The IUPHGC leverages the LifeOmic PHC as a core technology component. Additional end-user applications are wrapped around this foundation. CASE 4 Integrating Drug Sensitivity and Genomics in Organoid Models CASE 3 Machine Learning Identifies Biodynamic Signatures that Predict Chemotherapy Response ADI is using PHC to securely store and process biodynamic images of its Onco4D™ Biodynamic Chemotherapy Selection Assay. Using a machine learning algorithm, the resulting biodynamic signatures predict clinical response to chemotherapy with accuracy of > 90%. Biodynamic Imaging inside a living three-dimensional tumor fragment. Red coloration indicates enhanced motion, while blue indicates motion suppression. A time-frequency spectrogram shows the change in kinetic activity across a range of frequencies as the tumor reacts to chemotherapeutic challenge drugs over time. At USC, organoid models are established from donor materials for which genomic and clinical data are available. Organoids are screened against therapeutics of interest to inform pharmaceutical drug discovery efforts. PHC can integrate and visualize these data. Four colon adenocarcinoma organoids were grown in the presence of a range of concentrations of the EGFR inhibitor Lapatinib. A dose-dependent decrease in organoid viability was observed, and results compared to underlying genomic and clinical features of the samples. F104 Tumor P060618 Tumor F114 Tumor F111 Tumor P060618 Normal F114 Normal Download this poster Secure Your Cloud

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Page 1: The LifeOmic Precision Health Cloud™ is Accelerating Precision … · 2019-09-16 · machine learning, PHC provides actionable insights by uncovering the interrelationships between

The LifeOmic Precision Health Cloud™ is Accelerating Precision Medicine and Advancing Clinical Research

INTRODUCTIONIncreasingly vast amounts of patient data and the emergence of cloud computing and machine learning are driving innovation in healthcare.

Breakthroughs in genomic sequencing, proteomics, metabolomics and imaging have led to an explosion of information. Healthcare professionals and researchers today need to integrate clinical data with large omic datasets, access and share EHR/EMR data across increasingly interdisciplinary care teams, protect patient privacy, and engage patient acquired data.

The LifeOmic Precision Health CloudTM (PHC) is a secure cloud platform that integrates and indexes disparate sources of data including omic, clinical, imaging and population data. Cloud computing gives us the storage capacity and processing power to absorb, maintain and integrate emerging types patient data types along with structured electronic medical records and real-time telemetry from mobile devices, securely and cost effectively. The PHC provides a long-term solution for organizations facing the challenges that come with exploding health information. Through machine learning, PHC provides actionable insights by uncovering the interrelationships between disparate types of patient data and powers precision treatments. Here we present real-world case studies of how the PHC is accelerating precision health.

CASE 1The PHC Platform Supports Diverse Clinical and Research Applications

In 2016, Indiana University established the IU Precision Health Grand Challenge (IUPHGC). Its mission is to radically rethink and operationalize new care and research practices for disease states failed by the traditional health care system. One of the IUPHGC’s core strategies is to provide a comprehensive data/informatics infrastructure tailored to new models of health delivery.

SUMMARYThe LifeOmic Precision Health Cloud™ has proven to be a versatile and powerful platform for diverse clinical and research applications.To learn more, please write to [email protected].

www.lifeomic.com

FEATURES AND CAPABILITIES • Integrate large-scale disparate data: • Electronic Medical Records • Omics • Images and audio • Wearable, mobile medical and device streams • Standards-based, using FHIR and GA4GH • Mobile-native platform to support patient acquired data • Ultra-secure with fine-grained access controls • REST-based API for multi-level extensibility • “Big data” analytics and machine learning

APPLICATIONS

• Disease management/decision support for clinicians • Clinical trial management • Research cohort building and analytics • Secondary genomic pipelines • Controlled data sharing • Scalable secure storage • Wellness programs (fitness groups, corporate incentives, friends and family circles) • Population health • Patient education

THE LIFEOMIC PRECISION HEALTH CLOUD™A HIPAA-compliant cloud-based platform for large-scale clinical research, clinical trials and healthcare delivery

Demographic overview of the first 1,600 cases from IUPHGC’s Adult Precision Genomics disease team on the PHC.

Overview and analytical graphs can be configured within PHC’s user interface by project investigators.Se

curityResearchers

Medical Records, Omics, etc.

Connected devices

Wearables

Patients

Clinicians

Ben Salisbury1, Paul Biondich2,3, Milan Radovich2,3, Daniel Robertson4, Carolyn E. Banister5, Phillip J. Buckhaults6, Travis Morgan7, Tom Barber1

1LifeOmic, Inc., 2Regenstrief Institute, 3Indiana University School of Medicine, 4Indiana Biosciences Research Institute, 5Delphi Genomics, 6University of South Carolina, 7Animated Dynamics, Inc.

CASE 2Data Integration in the PHC Empowers Type 2 Diabetes Patient Analysis

One of the goals at the IBRI is to better understand Type 2 Diabetes (T2D), a complex disease with varied underlying genetic, biological and behavioral factors.

Using the PHC, the IBRI is able to store and analyze complex longitudinal EHR data for T2D subjects along with mobile data generated by patients. Machine learning algorithms can be applied to that data to better understand T2D, its associated co-morbidities, disease progression and prediction.

The IUPHGC leverages the LifeOmic PHC as a core technology component. Additional end-user applications are wrapped around this foundation.

CASE 4Integrating Drug Sensitivity and Genomics in Organoid Models

CASE 3Machine Learning Identifies Biodynamic Signatures that Predict Chemotherapy Response

ADI is using PHC to securely store and process biodynamic images of its Onco4D™ Biodynamic Chemotherapy Selection Assay. Using a machine learning algorithm, the resulting biodynamic signatures predict clinical response to chemotherapy with accuracy of > 90%.

Biodynamic Imaging inside a living three-dimensional tumor fragment. Red coloration indicates enhanced motion, while blue indicates motion suppression.

A time-frequency spectrogram shows the change in kinetic

activity across a range of frequencies as the tumor

reacts to chemotherapeutic challenge drugs over time.

At USC, organoid models are established from donor materials for which genomic and clinical data are available. Organoids are screened against therapeutics of interest to inform pharmaceutical drug discovery efforts. PHC can integrate and visualize these data.

Four colon adenocarcinoma organoids were grown in the presence of a range of concentrations of the EGFR inhibitor Lapatinib. A dose-dependent decrease in organoid viability was observed, and results compared to underlying genomic and clinical features of the samples.

F104 Tumor

P060618 Tumor

F114 Tumor

F111 Tumor

P060618 Normal

F114 Normal

Download this poster

Secure Your Cloud