agents of foodborne zoonoses illnesses caused by –campylobacter spp. –escherichia coli o157:h7...
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Agents of Foodborne Zoonoses• Illnesses caused by
– Campylobacter spp.– Escherichia coli O157:H7– Salmonella
• 80-95% cases from these bacteria estimated to be foodborne; probably of animal origin
• FoodNet data (repeat)– PulseNet: Molecular epidemiology
• Outbreaks and investigations• Carriage by food animals and food• Risk
Foodborne Diseases Active Surveillance Network (FoodNet)
• Principal foodborne disease component of CDC's Emerging Infections Program
• Active surveillance for foodborne diseases and related epidemiologic studies (PulseNet) to better understand the epidemiology of foodborne diseases in the United States.
• “Active” surveillance system, meaning public health officials frequently contact laboratory directors to find new cases of foodborne diseases and report these cases electronically to CDC.
FoodNet Disease Monitoring• Bacteria
– Campylobacter– Escherichia coli O157– Listeria monocytogenes– Salmonella– Shigella– Vibrio– Yersinia enterocolitica
• Parasites– Cryptosporidium– Cyclospora
• Viruses– Hepatitis A– Noroviruses
FoodNet
• 1995, FoodNet surveillance began in five locations: California, Connecticut, Georgia, Minnesota and Oregon
• New York and Maryland in 1998, Tennessee in 2000, Colorado in 2001 and New Mexico in 2004). – The total population of the 2004 bacterial
catchment is 44.5 million persons, or 15.1% of the United States population.
Relative Rates vs 1996-1998 Baseline
http://www.cdc.gov/mmwr/preview/mmwrhtml/mm5714a2.htm
Vibrio
Listeria
SalmonellaCampylobacter O157
Outbreaks 1998-2002
0
5
10
15
20
25
Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec
Pe
rce
nt
OB
/Mo
nth
Campylobacter (61)
E. coli (140)
Salmonella (585)
After FoodNet
Campylobacteriosis (1996-1999)
0
10
20
30
40
50
60
70
1996 1997 1998 1999
Inci
den
ce/1
05
California
Connecticut
Georgia
Minnesota
Oregon
After FoodNet
Campylobacteriosis 1996-1999
0
10
20
30
40
50
60
<1 1–4
5–9
10–1
4
15–1
9
20–2
9
30–3
9
40–4
9
50–5
9>6
0
Age (Years)
Inci
den
ce/1
05
FoodNet
www.fsis.usda.gov/PDF/Serotypes_Profile_Salmonella_Tables_&_Figures.pdf
Frequency of some Salmonella SerotypesIsolated from some Commodities
Foodborne Disease Outbreak Investigations
• Reported foodborne outbreaks (FoodNet)• Subtyping• PulseNet• E. coli O157:H7
– Hamburger– Spinach
• Salmonella– Peanuts– Pistachios (3/30), spices (4/2)
• Campylobacter– Poultry
Subtyping Issues
• ID cases likely to be part of an outbreak• Eliminate sporadic cases (background noise)• Difficult to select appropriate method
– Tenover et al. (1997)
• Salmonella– Bender et al (2001)– McQuiston et al (2004)
• E. coli O157:H7– Samadpour (1995)
• Campylobacter– Manning et al (2003)
Some Methods Used for Typing E. coli O157:H7 Strains
Toxin gene screening Thomas et al., 1996; Ostroff et al., 1989
Plasmid profiling Ostroff et al., 1989; Paros et al., 1993; Meng et al., 1995; Radu et al., 2001
Phage typing Ahmed et al., 1987; Khakhria et al., 1990; Barrett et al., 1994
Antibiotic susceptibility testing Kim et al., 1994; Farina et al., 1996; Radu et al., 2001;
Restriction fragment length polymorphism with phage λ (λ -RFLP)
Paros et al., 1993;Samadpour et al., 1993
Ribotyping Martin et al., 1996; Roberts et al., 2001
Pulsed-field gel electrophoresis (PFGE) Bohm and Karch, 1992;Barrett et al., 1994;Meng et al., 1995;Radu et al., 2001
PCR using randomly amplified polymorphic DNA (RAPD) sequences
Swaminathan and Barrett,1995; Radu et al., 2001
PCR using highly repetitive sequences (rep-PCR)
None specific for E. coli-O157:H7; Johnson and O’Bryan, 2000
Amplified fragment length polymorphism analysis (AFLP)
Iyoda et al., 1999; Zhao et al., 2000
How Does PulseNet Work?
1. PFGE
2. Pattern electronic database at local, state or federal level
3. Uploaded to national database at CDC
4. CDC searches for clusters of patterns
5. Local cluster searches
6. Clusters posted to Listserve.
Changes in Outbreaks
• Food consumption and practices in US have changed during the past 20 years
• Shift from the typical point source, or “church supper” outbreak, which is relatively easy to detect to the more diffuse, widespread outbreaks that occur over many communities with only a few illnesses in each community.
Changes in OutbreaksContinued• Large food producing facilities that disseminate
products throughout the country• Some few outbreaks that some low level
contamination of food products• Products are distributed among many states• Only a few illnesses occur in each community, • New laboratory and statistical tools, such as
PulseNet and the surveillance outbreak detection algorithm (SODA), impact ability to identify and investigate these new types of outbreaks
How does subtyping help in epidemiologic investigations?
• Identifies cases within an outbreak • Distinguishes outbreak cases from concurrent
sporadic cases• Reduces misclassification• Detects outbreaks through surveillance• Links apparently sporadic cases
– Cases may be too widely dispersed to detect– Organism too common to notice small increase– Identifies related cases and separates them from unrelated
ones
• DNA “fingerprinting” methods have greatly increased sensitivity of subtyping
Increases sensitivity of outbreak detection
Rangel, J.M. et al. Emerg. Infect. Dis. 11: 603-609 (2005)
Num
ber
of
Out
brea
ks/Y
ear
0
10
20
30
40
50
60
70
1 8 15 22 29 36 43 50 57 64 71
Day of Outbreak
Nu
mb
er o
f C
ases outbreak
detected 1993Meat recall
1993 Western States E. coli O157 Outbreak
732 cases4 deaths
39 d
2002 Colorado E. coli O157 Outbreak
0
10
20
30
40
50
60
70
1 8 15 22 29 36 43 50 57 64 71
Day of Outbreak
Nu
mb
er o
f C
ases
outbreak detected 2002
18 d
Swaminathan
Occurence in Food Products
• E. coli O157:H7– Beef– Fruits and vegetables
• Salmonella– Poultry, beef, hogs– Eggs, fruits, vegetables, nuts
• Campylobacter– Poultry
Some Pathogenic E. coli(Simplified)
LT/STenterotoxigenic
stx+
eae+
EHEC
O157:H7
E. coli Verotoxin =
Shigatoxin
E. coli O157:H7 Outbreak--1993
• Western states
• >500 laboratory-confirmed infections
• 4 deaths
• O157:H7 known in hamburger since 1982– Wells et al. (1983)
• Prompted FSIS to declare O157:H7 an adulterant in raw ground beef (1994)– Product often undercooked
Campylobacter Prevalence (US)
Top: Stern and Pretanik (2006); Bottom: FoodNet
20042003
0
10
20
30
40
50
Sep OctNov Dec Ja
nFeb M
ar AprM
ay Jun
Jul
Aug Sep
Pe
rce
nt
Po
sit
ive
Sa
mp
les
0
5
10
15
20
25
Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec
Pe
rce
nt
OB
/Mo
nth
Campylobacter (61)
E. coli (140)
Salmonella (585)
Chicken Carcass Rinses
Outbreaks
Campylobacter Prevalence (US)Chicken Carcass Rinses
0
10
20
30
40
50
Sep Oct Nov Dec Jan Feb Mar Apr May Jun Jul Aug Sep
Pe
rce
nt
Po
sit
ive
Sa
mp
les
0.0
0.5
1.0
1.5
2.0
2.5
3.0
log
CF
U/C
arc
as
s
Prevelance
CFU/carcass
Stern and Pretanik (2006)
FDA Press ReleaseJanuary 12, 2009
• Salmonella recovered from King Nut peanut butter• Minnesota Dept. Agriculture lab results• Genetic match to national cases• Strain associated with 30 illnesses in MN
– About 500 cases nationwide• Distributed to 7 states• Distributed in MN to:
– Long-term care facilities– Hospitals– Schools– Universities– Restaurants– Delicatessens– Cafeteria– Bakeries
>200 Manufacturers; 3882 Products
• Aspen Hills• Best Brands• Lovin Oven• Landies Candies• Weis Markets• Blanton’s Candies• Dinners Ready Meridian• Boca Grande Foods• Premier Nutrition• NutriSystem• Ready Pac Foods• PetSmart• Nature’s Path• Country Maid
• Evening Rise Bread• Clif Bar• Kroger• Abbott Nutrition• Meijer• Peanut Corp. Amer.• Ralcorp• South Bend Chocolate• McKee• Perry’s Ice Cream• Hy-Vee• Kellogg• King Nut
CDC Outbreak UpdateMarch 17, 2009
• 691 cases in 46 states; 8-9 related deaths
• Latest illness onset February 24, 2009
• To date, 16 clusters of infections in five states reported in schools and other institutions
• Among 14 clusters with detailed information, King Nut is the only brand of peanut butter used in those facilities.
The Epidemic Curve
• Progression of an outbreak over time. • Epi curve is complex and incomplete. • Delay between onset and reported to
public health authorities. – Typically takes 2-3 weeks for Salmonella
• Some background cases likely to occur without an outbreak. – This makes it difficult to say exactly which
case is the first in an outbreak
King Nut Peanut Butter
• Produced by Peanut Corporation of America (PCA), a small, family-owned and operated business. HQ in Lynchberg, VA.
• Plant positive for Salmonella in Blakely, GA. <50 employees• No longer producing any products• Expanded recall to include all peanut butter and peanut
paste produced at this plant since July 1, 2008. • Peanut butter and peanut butter paste was not sold directly
to consumers– Distributed to institutions, food service providers, food manufacturers
and distributors in many states, Canada, Korea, and Haiti. – Peanut butter and peanut paste is commonly used in many products,
including cookies, crackers, cereal, candy, ice cream and others.