Table S7. Alignments of the HVS-I sequences. For each amplification the name of the sample, the extraction, the amplification (* means that this was performed after UNG treatment) and the number of clones are given. For the samples which are only directly sequenced and not cloned, the direction is indicated with u and l meaning respectively that the heavy and the light strand were amplified. J01415, Anderson and CRS indicate the Cambridge Reference Sequence (S93). AC000021 and rCRS indicate the revised Cambridge Reference Sequence (S43).

Alignment Spiginas 4

Alignment Spiginas 4

Alignment Donkalnis 1

Alignment Donkalnis 1

Alignment Kretuonas 3

Alignment Kretuonas 3

Alignment Kretuonas 1

Alignment Kretuonas 1

Alignment Dudka 2

Alignment Dudka 2

Alignment Dudka 3

Alignment Dudka 3

Alignment Drestwo 2

Alignment Drestwo 2

Alignment Chekalino 4a

Alignment Chekalino 4a

Alignment Lebyazhinka 4

Alignment Lebyazhinka 4

Alignment Bad Drrenberg 2

Alignment Bad Drrenberg 2

Alignment Ostorf SK28a

Alignment Ostorf SK28a

Alignment Ostorf SK8d

Alignment Ostorf SK8d

Alignment Ostorf SK35a

Alignment Ostorf SK35a

Alignment Ostorf SK12a

Alignment Ostorf SK12a

Alignment Ostorf SK45a

Alignment Ostorf SK45a

Alignment Ostorf SK18

Alignment Ostorf SK18

Alignment Ostorf SK19

Alignment Ostorf SK19

Alignment Hohlenstein-Stadel 30a

Alignment Hohler Fels 49IAlignment Hohlenstein-Stadel 30b