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Page 1: PhD programme in Agriculture, Food and Environmentagricultural, food and agro-environmental sciences. The Director of DAFE is currently Prof. Alberto Pardossi (alberto.pardossi@unipi.it)

UUNNIIVVEERRSSIITTÀÀ DDII PP IISSAA

PhD programme in

Agriculture, Food

and Environment

Page 2: PhD programme in Agriculture, Food and Environmentagricultural, food and agro-environmental sciences. The Director of DAFE is currently Prof. Alberto Pardossi (alberto.pardossi@unipi.it)

PhD programme in Agriculture, Food and Environment

Department of Agriculture, Food and Environment

University of Pisa

Postal address:

Via del Borghetto 80, 56124 Pisa

Italy

Internet: http://www.agr.unipi.it/phd-programme-in-agriculture-food-and-environment-3/

Compilation & Final editing: A. Pardossi, A. Cavallini (University of Pisa)

Design: B. Sereni (University of Pisa)

January 2019

The information contained in this brochure is subject to change

Page 3: PhD programme in Agriculture, Food and Environmentagricultural, food and agro-environmental sciences. The Director of DAFE is currently Prof. Alberto Pardossi (alberto.pardossi@unipi.it)

The University of Pisa (UNIPI) is one of the most important universities in Italy and has a

long tradition of excellence in terms of education and scientific research. The Department

of Agriculture, Food and Environment (DAFE) is dedicated to research at the frontiers of

agricultural, food and agro-environmental sciences. The Director of DAFE is currently Prof.

Alberto Pardossi ([email protected]) and the teaching staff consists of nearly 70

professors and researchers.

The PhD programme in Agriculture, Food and Environment is a three-year post-graduate

research course at DAFE. The official language of the PhD course is English. The

Coordinator of the PhD programme is currently Prof. Andrea Cavallini

([email protected]). The Phd programme has as central theme 'Food sustainability'.

Its scope is articulated around three main areas: 1) biological basis of food sustainability;

2) sustainability of food production systems; 3) food quality and safety.

The course aims at training researchers with an up-to-date, excellent disciplinary ground

and with a deep understanding of the systemic implications of their specific field of activity

and awareness of the importance of mutual learning with enterprises, administrations and

civil society. The PhD programme encourages the development of a common systemic

approach through its training program, which will be centered upon the principles of

sustainability science, and through its partnership strategy. In this sense, specific

agreements with external institutions and/or with some firms are established for specific

research themes, with double (university and external institution) supervision. After

graduation, the PhD student is expected to be a highly qualified and skilful researcher in

the field of basic or applied research. The job placement of PhD graduates is in public or

private research centres in the sectors of agriculture, food industry and environment.

At present, the Doctorate Board includes 21 professors at the University of Pisa and 3

senior scientists at various research institutes in Italy or abroad. Currently, 36 graduate

students are attending the course or are waiting for the final examination; ten students

come from foreign universities.

Page 4: PhD programme in Agriculture, Food and Environmentagricultural, food and agro-environmental sciences. The Director of DAFE is currently Prof. Alberto Pardossi (alberto.pardossi@unipi.it)

Doctorate Board

SURNAME & NAME INSTITUTION QUALIFICATION EMAIL RESEARCH INTERESTS

1. ANGELINI, Gabriella

Luciana UNIPI Full Professor [email protected]

Agronomy; crop production and

quality of food and non-food species

2. ARDUINI, Iduna UNIPI Researcher [email protected] Botany applied to agro-ecosystems

3. BARTOLINI, Fabio UNIPI Researcher [email protected] Agricultural economics; bioeconomy;

modelling farmer behaviour

4. BRUNORI, Gianluca UNIPI Full Professor [email protected] Agricultural economics; bioeconomy;

agricultural and food policy

5. CANALE, Angelo UNIPI Researcher [email protected] Integrated pest management; insect

behaviour

6. CAVALLINI, Andrea UNIPI Full Professor [email protected] Plant genetics and genomics

7. CHERUBINI, Paolo

Swiss Federal Institute

for Forest, Snow and

Landscape Research

Senior

Researcher [email protected]

Tree physiology; silviculture and forest

ecology

8. GIOVANNETTI, Manuela UNIPI Full Professor [email protected]

Soil microbiology; mycorrhizal

symbioses; rhizosphere beneficial

bacteria

9. GUCCI, Riccardo UNIPI Full Professor [email protected] Physiology and management of fruit

trees; olive trees; oil quality

10. GUGLIELMINETTI,

Lorenzo UNIPI Researcher [email protected] Plant physiology; plant proteomics

11. LOCONTO, Allison-Marie INRA (France) Senior

Researcher [email protected]

Agricultural economics; institutional

innovations in conformity assessment

systems

12. LUCCHI, Andrea UNIPI Ass. Professor [email protected] Integrate pest management

Page 5: PhD programme in Agriculture, Food and Environmentagricultural, food and agro-environmental sciences. The Director of DAFE is currently Prof. Alberto Pardossi (alberto.pardossi@unipi.it)

13. MASSAI, Rossano UNIPI Full Professor [email protected] Management of fruit crops; fruit quality

14. MAZZONCINI, Marco UNIPI Full Professor [email protected] Agronomy; crop production and

organic agriculture

15. MELE, Marcello UNIPI Associate

Professor [email protected]

Lipid metabolism in ruminants; rumen

fermentation and methane emission;

milk and meat quality.

16. NALI, Cristina UNIPI Associate

Professor [email protected]

Air pollution and global change; tree

hazard assessment

17. PARDOSSI, Alberto UNIPI Full Professor [email protected] Greenhouse and nursery

management; hydroponic technology

18. PEZZAROSSA, Beatrice CNR Senior

Researcher [email protected]

Trace elements in the soil-plant

system; soil quality

19. PISTELLI, Laura UNIPI Researcher [email protected] Plant physiology; herbs and officinal

plants

20. RAFFAELLI, Michele UNIPI Associate

Professor [email protected]

Machines for soil tillage, conservation

and no tillage, physical weed control,

soil disinfection with physical methods

21. RANIERI, Annamaria UNIPI Full Professor [email protected] Food quality, plant stress physiology

and biochemistry

22. SERRA, Andrea UNIPI Researcher [email protected] Animal food production and quality

23. VANNACCI, Giovanni UNIPI Full Professor [email protected] Fungal plant pathogens; biocontrol of

plant diseases; Mycology

24. ZINNAI, Angela UNIPI Associate

Professor [email protected] Food technology

Page 6: PhD programme in Agriculture, Food and Environmentagricultural, food and agro-environmental sciences. The Director of DAFE is currently Prof. Alberto Pardossi (alberto.pardossi@unipi.it)

Programme overview

The PhD programme essentially consists in conducting an original research work under

supervision and writing a dissertation (thesis) concerning the following topics:

- food science and technology;

- genomics, proteomics and metabolomics of species of agricultural interest;

- multifunctional agriculture;

- plant and animal production systems, even in urban environment;

- plant physiology, ecology and biochemistry;

- plant, animal and microbial biotechnologies;

- technologies for plant and soil protection and environmental bioremediation.

Each PhD student is supported by a supervisor at DAFE. The PhD students also supervise

MSc students and participate in educational activities such as courses, seminars, summer

schools and congresses organized by the University of Pisa or other institutions in Italy or

abroad, following a tailor-made training plan aimed at achieving in-depth knowledge of

specific scientific issues and improving general skills.

The courses and seminars organized in 2019 for all PhD students are the following:

Course ―Scientific English‖. January-March 2019. Organized by University of Pisa.

Course ―Fundamentals of Statistics for Agricultural Research‖. March-April 2019.

Lecturers: Dr. G. Conte (Univ. of Pisa); Prof. N. Macciotta (Univ. of Sassari).

Course ―Publishing in International Scientific Journals‖. June 2019. Lecturer: Dr. G.

Benelli (Univ. of Pisa).

Students generally attend other courses, seminars and scientific meetings organized by

DAFE. The detailed programme of teaching activities for each year is generally published

at the end of February.

At the end of each year, each PhD student holds a public seminar and prepares a report

on his/her academic and research activities, which must evaluated and approved by the

Doctorate Board.

All the PhD students are invited to spend at least six months in renowned research

institutes abroad during the second and/or third year of the course.

At the end of the course, the thesis (in English) is preliminary evaluated by two external

referees belonging to other Universities in Italy or abroad.

Finally, the PhD degree is awarded after a public examination in the form of defence of the

dissertation before an external committee, which is appointed by the Doctorate Board.

Each candidate must publish at least one scientific paper in an indexed journal (ISI–Web

of Knowledge) before graduation.

Page 7: PhD programme in Agriculture, Food and Environmentagricultural, food and agro-environmental sciences. The Director of DAFE is currently Prof. Alberto Pardossi (alberto.pardossi@unipi.it)

A list of current PhD projects is reported below.

Current PhD projects

CANDIDATE YEAR THESIS SUBJECT SUPERVISOR

[OPPONENT]

1. ABOU CHEHADE, Lara 3+ Performance of field

vegetable cropping systems

under organic farming: effects

of tillage, cover cropping and

weed management.

M. Mazzoncini,

D. Antichi

[A. Peruzzi]

2. BECAGLI, Michelangelo 1

Effects of biochar on

chemical and biological

properties in soil plant system

R. Cardelli

[A. Pardossi,

M. Mazzoncini]

3. CALZONE, Antonella 2

Future Mediterranean

scenario: will the

pomegranate be a crop

species?

E. Pellegrini,

B.E. Maserti

[D. Remorini]

4. CECCANTI, Costanza 2

Wild plants, a better

alternative to common

vegetables and their

nutritional and toxic

properties as ready-prepared

fresh salads and V gamma

vegetables

A. Pardossi, L. Guidi

[L. Angelini]

5. CHIELLINI, Carolina 1

Evaluation of heavy metal

decontamination

performances in algae and

plants

L. Guglielminetti,

L. Pistelli

[A. Scartazza,

A. Ciurli]

6. CHINEDU TEMPLE, Obi 2

The Impact of International

Migration on Agriculture,

Food and Rural Development

of Home and Host

Communities: Evidence from

Nigerian Migrants in Italy and

Belgium

F. Bartolini

[G. Brunori]

7. CIUCCI, Francesca 3

Productive and metabolic

response of Maremmana and

Aubrac steers maintained in

feedlot or grazing systems

A. Serra, M. Mele

[T. Giordani]

8. ESNARRIAGA NAIMID DEL

VALLE, Dayana 2

Plant to plant and plant to soil

interactions in intercrops and

mixed crops

I. Arduini [M. Mariotti]

Page 8: PhD programme in Agriculture, Food and Environmentagricultural, food and agro-environmental sciences. The Director of DAFE is currently Prof. Alberto Pardossi (alberto.pardossi@unipi.it)

9. GIOVANNETTI, Alessandra 2

The novel food regulation in

the European and

international context

A. Di Lauro

[G. Strambi]

10. GIOVANNINI, Luca 1

Molecular and functional

diversity of beneficial

microorganisms associated

with the mycorrhizosphere

M. Giovannetti,

A. Turrini

[C. Sbrana]

11. KOBZEVA, Marina 1

Limiting and enabling factors

in transdisciplinary research:

The example of Living Labs

for rural-urban relations in the

EU-funded research project

ROBUST

G. Brunori, D. Maye

[P. Prosperi]

12. LO PICCOLO, Ermes 3

Photo-oxidative stress in

young and senescent leaves

characterized by the

presence or not of

anthocyanins

D. Remorini

[L. Guidi]

13. MACALUSO, Monica 1

The valorization of olive oils

through innovation and

optimization of packaging and

storage conditions adopted in

order to increase the olive

growing sustainability

A. Zinnai

[M.F. Quartacci,

F. Venturi]

14. MANNUCCI, Alessia 2

UV radiation and leaf-root

communication in fungal

pathogen resistance and

fortification of food plants

M.F. Quartacci

[L. Guglielminetti]

15. MARCHICA, Alessandra 2

Characterization and isolation

of genes and proteins

involved in abiotic stress

response in sage (Salvia

officinalis L.)

E. Pellegrini,

R. Bernardi

[L. Guidi]

16. MARCHIONI, Ilaria 2 Edible flowers as new source

of nutraceutical foods

L. Pistelli

[A. Pardossi]

17. MATTIONI, Dalia 3+ The impact of food

provisioning environments on

nutrition: the contribution of

local food systems

G. Brunori

[F. Di Iacovo]

18. MOLES, Tommaso Michele 3+ Characterization of landrace

genotypes of Solanum

lycopersicum

L. Guglielminetti,

P. Picciarelli

[A. Scartazza]

19. MOLINA, Natalia 1 Interactive innovation in

agriculture G. Brunori [F. Galli]

Page 9: PhD programme in Agriculture, Food and Environmentagricultural, food and agro-environmental sciences. The Director of DAFE is currently Prof. Alberto Pardossi (alberto.pardossi@unipi.it)

20. ORLANDO, Jacopo Gabriele 3

The role of multifunctionality

principle into social

responsibility initiatives

G. Brunori

[M. Rovai]

21. PALAI, Giacomo 1

Soil water availability effects

on yield and fruit quality in

fruit trees and grapevine

C. D‘Onofrio,

G. Caruso

[S.D. Castellarin]

22. PALMIOLI, Lucia 3

Small farms, small food

businesses and sustainable

food security

G. Brunori

[F. Di Iacovo]

23. PIERRO, Roberto 3+ Symptom severity and

multilocus sequence typing

analysis of Bois Noir

phytoplasma strains in

Tuscan vineyards

A. Materazzi

[D. Rizzo]

24. PIRCHIO, Michel 3+ Development of innovative

machines and application of

precision farming instruments

for turf grass management

and turf quality control.

M. Fontanelli,

M. Volterrani

[A. Peruzzi]

25. PISUTTU, Claudia 1 How to counteract the

Ailanthus altissima invasion:

could Verticillium have a role

in the biological control of the

“Tree of Heaven”?

G. Lorenzini

[R. Bernardi]

26. PUIG SIRERA, Angela 2 Agro-hydrological and

spectral models to improve

the accuracy of monitoring

water status and irrigation

efficiency in Mediterranean

arboreal crops

G. Rallo

[D. Intrigliolo]

27. PURNAWAN, Endar 2 Development of Small Food

Business in the Kawasan

Mandiri Pangan (KMP)

Program in Border Area in

Indonesia

G. Brunori

[A. Rossi]

28. RABELO LANZA, Marya

Cristina

1 Multitemporal analysis of land

use and land cover changes

in Mediterranean area by

integrating information from

European data-bases, remote

sensing and local surveys

N. Silvestri

[T. Sabbatini]

29. RICCIARDI, Renato 3 Semio-chemical and benificial

insects for biological control

of pests in vineyards

A. Lucchi

[B. Conti]

Page 10: PhD programme in Agriculture, Food and Environmentagricultural, food and agro-environmental sciences. The Director of DAFE is currently Prof. Alberto Pardossi (alberto.pardossi@unipi.it)

30. DA ROCHA O. TEIXEIRA,

Raiza

2 The role of small farmers on

nutrition security: a gender-

sensitive analysis

G. Brunori

[F. Galli]

31. SPORTELLI, Mino 1

Innovative strategies and

machines to manage weeds

in urban environment and in

conservation agriculture

C. Frasconi,

M. Volterrani

[M. Fontanelli]

32. TAGLIERI, Isabella 2

Innovative technologies for

the production and

preservation of natural

leavening products with high

nutraceutical content

A. Zinnai, F. Venturi

[M.F. Quartacci]

33. USAI, Gabriele 3 Structural genomics for plant

breeding: the fig (Ficus carica

L.), an ancient crop with

promising perspectives

L. Natali,

F. Mascagni

[A. Zuccolo]

34. VENTIMIGLIA, Maria 1

ASTER-REP, a database of

Asteraceae transposable

sequences

F. Mascagni

[A. Zuccolo]

35. VICENTE MUNOZ, Isabel 3

Application of CRISPR-Cas9

technology to produce mutant

fungal strains for biocontrol of

crop plant diseases

G. Vannacci,

S. Sarrocco

[T. Giordani]

36. VIVIANI, Ambra 1

Application of genome editing

in Lactuca sativa L. to

increase Ascorbic Acid

content in leaves

T. Giordani,

C. Pugliesi

[L. Pistelli,

M. Fambrini

Page 11: PhD programme in Agriculture, Food and Environmentagricultural, food and agro-environmental sciences. The Director of DAFE is currently Prof. Alberto Pardossi (alberto.pardossi@unipi.it)

Recent (2016-2018) PhD dissertations

STUDENT YEAR TITLE SUPERVISOR

ARCURI, Sabrina 2018

Assessment of the impact of

global drivers of change on

Europe's food security

G. Brunori

BATTINI, Fabio 2017

The production of nutraceutical

compounds in food plants as

affected by mycorrhizal

symbionts and associated

microbiota

M. Agnolucci

BONILLA LOOR, Mario Javier 2018

Physiological and molecular

interactions between plants and

beneficial fungi

L. Avio,

M. Giovannetti

CAPPUCCI, Alice 2017

Study of the effects of dietary

tannins and vegetable oils on the

rumen microbiota composition,

methane production and milk

fatty acid composition

M. Mele

CATOLA, Stefano 2016

Transcriptomic analysis of

Arabidopsis thaliana in response

to VOCs emitted from Solanum

lycopersicum subjected to

combined abiotic stress (water

stress + UV radiation)

L. Guglielminetti,

M. Centritto

(CNR, Florence)

COTROZZI, Lorenzo 2017

Response of oak species

(Quercus ilex, Q. cerris and Q.

pubescens) to combined stress to

simulate a 2050 global climate

change scenario.

C. Nali

FIORINI, Lisa 2016 Effects of a Trichoderma

harzianum isolate on tomato G. Vannacci

GAVA, Oriana 2017 Sustainability performance of

biogas chains G. Brunori

GENNAI, Clizia 2016 Gene expression in olive plants

under drought conditions R. Gucci

GIUNTI, Giulia 2016

Pre- and post-imaginal

associative learning for host-

borne cues from different trophic

contexts in the parasitic wasp

Psyttalia concolor (Szépligeti)

(Hymenoptera: Braconidae)

A. Canale

Page 12: PhD programme in Agriculture, Food and Environmentagricultural, food and agro-environmental sciences. The Director of DAFE is currently Prof. Alberto Pardossi (alberto.pardossi@unipi.it)

IBRAHIM EHDADAN, Jamal Ali

Mohamed 2018

The effects of agricultural policies

on wheat production in Libya.

Policy Analysis Matrix Approach

(PAM)

G. Brunori

MARTINI, Andrea 2018

Agronomic and phytochemical

evaluation of Avena sativa L. and

Stevia rebaudiana Bert. as

sources of food and bio-active

compounds

L. Angelini

MASCAGNI, Flavia 2016 Structural genomics of sunflower

(Helianthus annuus L.) L. Natali

NARI, Anita 2019

Producing olive oil with a high

nutraceutical and organoleptic

quality using innovative operative

technique (extraction and storage

method)

A. Zinnai

PALLA, Michela 2018

Molecular and functional

biodiversity of microrganisms

related to food production

M. Giovannetti,

M. Agnolucci

PEPE, Alessandra 2017

Biofortification of food plants by

mycorrhizal symbionts:

investigations on the role of

mycelial networks.

M. Giovannetti

PUCCINELLI, Martina 2017

Enrichment of food crops with

selenium. Controlled production

of selenium-enriched plants to

delay fruit ripening and plant

senescence and to increase the

nutritive value and the health

benefits.

F. Malorgio,

B. Pezzarossa

(CNR, Pisa)

SANTIN, Marco 2019 UV-B signalling in fruits: from

perception to fruit quality A. Ranieri

SOLORZANO ZAMBRANO,

Liceth Yanina 2018

Functional genomics of fig (Ficus

carica L.) A. Cavallini

SULCA VILLAMARÌN, Tania

Salomé 2017

Application of jasmonates to

improve the production of

secondary metabolites in plants

of agricultural interest, grown in

vitro and in vivo

P. Vernieri

VANGELISTI, Alberto 2018 Transcriptome analyses through

next generation sequencing T. Giordani

XIAOGUO, 'Stone' Ying 2018 Wine quality changes under

different storage conditions A. Zinnai

Page 13: PhD programme in Agriculture, Food and Environmentagricultural, food and agro-environmental sciences. The Director of DAFE is currently Prof. Alberto Pardossi (alberto.pardossi@unipi.it)

ZAPPARATA, Antonio 2018

Insights on the mechanisms of

action of the Trichoderma-based

biopesticide Remedier®

G. Vannacci

Publications

From 2017 to 2018, PhD students at DAFE have published more than one hundred

articles, including research or review papers in peer-reviewed journals or in conference

proceedings. A selection of publications related to the subject of the dissertation of each

candidate is reported below:

Abou Chehade L., Al Chami Z., de Pascali S.A., Cavoski I., Fanizzi F.P. (2017). Biostimulants from food processing by-products: agronomic, quality and metabolic impacts on organic tomato (Solanum lycopersicum L.). Journal of the Science of Food and Agriculture 2017.

Ascrizzi R., Taglieri I., Sgherri C., Flamini G., Macaluso M., Sanmartin C., Venturi F., Quartacci M.F., Pistelli L., Zinnai A. (2018). Nutraceutical oils produced by olives and citrus peel of tuscany varieties as sources of functional ingredients. Molecules 24: 010065.

Buti M., Moretto M., Barghini E., Mascagni F., Natali L., Brilli M., Lomsadze A., Sonego P., Giongo L. et al. (2018). The genome sequence and transcriptome of Potentilla micrantha and their comparison to Fragaria vesca (the woodland strawberry). GigaScience 7: 1-14.

Catola S., Castagna A., Santin M., Calvenzani V., Petroni K., Mazzucato A., Ranieri A. (2017). The dominant allele Aft induces a shift from flavonol to anthocyanin production in response to UV-B radiation in tomato fruit. Planta 246: 263-275.

Ceccanti C., Landi M., Benvenuti S., Pardossi A., Guidi L. (2018). Mediterranean Wild Edible Plants: Weeds or ―New Functional Crops‖? Molecules 23: 2299.

Cotrozzi L., Campanella A., Pellegrini E., Lorenzini G., Nali C., Paoletti E. (2018). Phenylpropanoids are key players in the antioxidant defense to ozone of European ash, Fraxinus excelsior. Environmental Science and Pollution Research 25: 8137-8147.

Galli F., Arcuri S., Bartolini F., Vervoort J., Brunori G. (2017). Exploring scenario guided pathways for food assistance in Tuscany. Bio-based and Applied Economics 5: 237-266.

Gava, O., Bartolini, F., Venturi, F., Brunori, G., Zinnai, A., & Pardossi, A. (2018). A reflection of the use of the life cycle assessment tool for agri-food sustainability. Sustainability 11:11010071.

Giovannetti A. (2018). Substances with endocrine disrupting properties: the regulation approach in the European Union between risks and scientific uncertainties, Third Canadian Conference on food law and policy, ―Innovations in Agrifood Law‖, 25-27 September 2018, Laval University, Quebec, Canada.

Guidi L., Remorini D., Cotrozzi L., Giordani T., Lorenzini, G., Massai R., Nali C., Natali L., Pellegrini E., Trivellini A., Vangelisti A., Vernieri P., Landi M. (2017). The harsh life of an urban tree: the effect of a single pulse of ozone in salt-stressed Quercus ilex saplings. Tree Physiology 37: 246-260.

Hebinck A., Galli F., Arcuri S., Carroll B., O‘Connor D., Oostindie H. (2018). Capturing change in European food assistance practices: a transformative social innovation perspective. Local Environment 23: 398-413.

Lo Piccolo E., Landi M., Pellegrini E., Agati G., Giordano C., Giordani T., Lorenzini G., Malorgio F., Massai R., Nali C., Rallo G., Remorini D., Vernieri P., Guidi L. (2018). Multiple consequences induced by epidermally-located anthocyanins in young, mature and senescent leaves of Prunus. Frontiers in Plant Science 9: 917.

Lucchi A., Ladurner E., Iodice A., Savino G., Ricciardi R., Cosci F., Conte G., Benelli G. (2018). Eco-friendly pheromone dispensers—a green route to manage the European grapevine moth? Environmental Science and Pollution Research 25: 9426–9442.

Page 14: PhD programme in Agriculture, Food and Environmentagricultural, food and agro-environmental sciences. The Director of DAFE is currently Prof. Alberto Pardossi (alberto.pardossi@unipi.it)

Lucchi A., Loni A., Gandini L.M., Scaramozzino P.L., Ioriatti C., Ricciardi R., Shearer P.W. (2017). Using herbivore-induced plant volatiles to attract lacewings, hoverflies and parasitoid wasps in vineyards: achievements and constraints. Bulletin of Insectology 70: 273-282.

Mannelli F., Cappucci A., Pini F., Pastorelli R., Decorosi F., Giovannetti L., Mele M., Minieri S., Conte G., Pauselli M., Rapaccini S., Viti C., Buccioni A. (2018). Effect of different types of olive oil pomace dietary supplementation on the rumen microbial community profile in Comisana ewes. Scientific Reports 8:8455.

Mascagni F., Giordani T., Ceccarelli M., Cavallini A., Natali L. (2017). Genome-wide analysis of LTR retrotransposon diversity and its impact on the evolution of the genus Helianthus (L.). BMC Genomics 18: 634.

Mattioni D., Brunori G. (2018). Moving towards healthy diets: the key role of food environments. Nutrition and Food Science International Journal 6, issue 1.

Moles T.M., Mariotti L., De Pedro L.F., Guglielminetti L., Picciarelli P., Scartazza A. (2018). Drought induced changes of leaf-to-root relationships in two tomato genotypes. Plant Physiology and Biochemistry 128: 24-31.

Natali L., Vangelisti A., Guidi L., Remorini D., Cotrozzi L., Lorenzini G., Nali C., Pellegrini E., Trivellini A., Vernieri P., Landi M., Cavallini A., Giordani T. (2018). How Quercus ilex L. saplings face combined salt and ozone stress: a transcriptome analysis. BMC Genomics 19: 872.

Palla M., Agnolucci M., Calzone A., Giovannetti M., Di Cagno R., Gobbetti M., Rizzello C. G., Pontonio E. (2018). Exploitation of autochthonous Tuscan sourdough yeasts as potential starters. International Journal of Food Microbiology, August 2018, in press.

Palla M., Battini F., Cristani C., Giovannetti M., Squartini A., Agnolucci M. (2018). Quorum sensing in rhizobia isolated from the spores of the mycorrhizal symbiont Rhizophagus intraradices. Mycorrhiza 28: 773-778.

Palla M., Cristani C., Giovannetti M., Agnolucci M. (2017). Identification and characterization of lactic acid bacteria and yeasts of PDO Tuscan bread sourdough by culture dependent and

Peruzzi A., Martelloni L., Frasconi C., Fontanelli M., Pirchio M., Raffaelli M. (2017). Machines for non-chemical intra-row weed control in narrow and wide-row crops: a review. Journal of Agricultural Engineering 48: 57-70.

Pierro R., Passera A., Panattoni A., Rizzo D., Stefani L., Bartolini L., Casati P., Luvisi A., Quaglino F., Materazzi A. (2018). Prevalence of a ‗Candidatus Phytoplasma solani‘ strain, so far associated only with other hosts, in Bois Noir-affected grapevines within Tuscan vineyards. Annals of Applied Biology 173: 202-212.

Puccinelli M., Malorgio F., Pezzarossa B. (2017). Selenium enrichment of horticultural crops. Molecules 22: 933.

Puccinelli M., Malorgio F., Terry L.A., Tosetti R., Rosellini I., Pezzarossa B. (2018). Effect of

selenium enrichment on metabolism of tomato (Solanum lycopersicum) fruit during post‐harvest ripening. Journal of the Science of Food and Agriculture, October 2018, in press.

Rallo G., Provenzano G., Castellini M., Puig Sirera A. (2018). Application of EMI and FDR sensors to assess the fraction of transpirable soil water over an olive grove. Water 10: 168.

Sabella E., Pierro R., Luvisi A., Panattoni A., D‘Onofrio C., Scalabrelli G., Nutricati E., Aprile A., De Bellis L., Materazzi A. (2018). Phylogenetic analysis of viruses in Tuscan Vitis vinifera sylvestris (Gmeli) hegi. PLoS ONE 13: 1-16.

Sanmartin C., Venturi F., Macaluso M., Nari A., Quartacci M.F., Sgherri C., Flamini G., Taglieri I., Ascrizzi R., Andrich G., Zinnai A. (2018). Preliminary results about the use of argon and carbon dioxide in the extra virgin olive oil (EVOO) storage to extend oil shelf life: chemical and sensorial point of view. European Journal of Lipid Science and Technology 120: 1800156.

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Sanmartin C., Venturi F., Sgherri C., Nari A., Macaluso M., Flamini G., Quartacci M.F., Taglieri I., Andrich G., Zinnai A. (2018). The effects of packaging and storage temperature on the shelf-life of extra virgin olive oil. Heliyon 4:e00888.

Santin M., Neugart S., Castagna A., Barilari M., Sarrocco S., Vannacci G., Schreiner M., Ranieri A. (2018). UV-B pre-treatment alters phenolics response to Monilinia fructicola infection in a structure-dependent way in peach skin. Frontiers in Plant Science 9: 1598.

Sbrana C., Strani P., Pepe A., de Novais C.B., Giovannetti M. (2018). Divergence of Funneliformis mosseae populations over 20 years of laboratory cultivation, as revealed by vegetative incompatibility and molecular analysis. Mycorrhiza 28: 1-13.

Serra A., Conte G., Giannessi E., Casarosa L., Lenzi C, Baglini A., Ciucci F., Cappucci A., Mele M. (2017). Histological characteristics, Fatty acid composition of lipid Fractions, and cholesterol content of Semimembranosus and Triceps Brachii Muscles in Maremmana and limousine Bovine Breeds. Frontiers in Veterinary Science 4:89.

Serra A., Conte G., Giovannetti M., Casarosa L., Agnolucci M., Ciucci F., Palla M., Bulleri E., Cappucci A., Servili M., Mele M. (2018). Olive pomace in diet limits lipid peroxidation of sausages from Cinta Senese swine. Eur. J. Lipid Science and Technology 120: 1700236.

Solorzano Zambrano L.Y., Usai G., Vangelisti A., Mascagni F., Giordani T., Bernardi R., Cavallini A., Gucci R., Caruso G., et al. (2017). Cultivar-specific transcriptome prediction and annotation in Ficus carica L. Genomics Data 13: 64–66.

Tavarini S., Passera B., Martini A., Avio L., Sbrana C., Giovannetti M., Angelini L.G. (2018). Plant growth, steviol glycosides and nutrient uptake as affected by arbuscular mycorrhizal fungi and phosphorous fertilization in Stevia rebaudiana Bert. Industrial Crops & Products 111: 899-907.

Turrini A., Bedini A., Bonilla Loor M., Santini G., Sbrana C., Giovannetti M., Avio L. (2018). Local diversity of native arbuscular mycorrhizal symbionts differentially affects growth and nutrition of three crop plant species. Biology and Fertility of Soils 54: 203-217.

Usai G., Mascagni F., Natali L., Giordani T., Cavallini A. (2017). Comparative genome-wide analysis of repetitive DNA in the genus Populus L. Tree Genetics & Genomes 13: 96.

Vangelisti A., Natali L., Bernardi R., Sbrana C., Turrini A., Hassani-Pak K., Hughes D., Cavallini A., Giovannetti M., Giordani T. (2018). Transcriptome changes induced by arbuscular mycorrhizal fungi in sunflower (Helianthus annuus L.) roots. Scientific Reports 8: 4.

Venturi F., Sanmartin C., Taglieri I., Xiaoguo Y., Deng S., Andrich G., Zinnai A. (2017). The influence of packaging on the time evolution of red wine. Shelf life of red wine as a function of the storage conditions adopted over a period of 12 months. Agro-Food Industry Hi-Tech 28: 61-63.

Zapparata A., Da Lio D., Sarrocco S., Vannacci G., Baroncelli R. (2017). First report of Colletotrichum godetiae causing grape (Vitis vinifera) berry rot in Italy. Plant Disease 101: 6.

Zapparata A., Da Lio D., Somma S., Vicente Muñoz I., Malfatti L., Vannacci G., Moretti A., Baroncelli R., Sarrocco S. (2017). Genome sequence of Fusarium graminearum ITEM 124 (ATCC 56091), a mycotoxigenic plant pathogen. Genome Announcements 5: e01209-17.

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Applications

Candidates are required to have a Master's degree and have to demonstrate good

knowledge of the research themes reported above.

The number of graduates students admitted to each program varies from year to year

depending on the number of grants available and the results of the selection process. For

instance, 12 candidates were admitted in 2018 (XXXIV cycle, 2018-2021) and ten

scholarships were available, including two reserved for candidates who have achieved

their MSc degree abroad.

A grant consists of a stipend of approx. € 13,600 per year (including social security

contribution) for the whole duration of the PhD programme (3 years maximum). The grant

is increased by 50% if the student does an internship (at least 15 days) abroad in a foreign

academic or research institution. After the first year, each candidate receives an annual

research contribution of approximately € 1,600.

The selection of PhD candidates is based on their educational (f.i., average exam grade,

final numerical grade for the entire degree, honour etc.) and scientific (publications,

positions as young scientist, stage abroad etc.) curriculum and on an interview (either on

site or via web conference) conducted in the research areas that every year the Board

proposes to the new candidates.

The admission call is open in May-June and the selection takes place in August-

September. The candidates should check the website (http://dottorato.unipi.it/index.php/en/)

regularly for additional information on deadlines for applications, proposed research

subjects, selection criteria, date(s) of interview, number of scholarships and positions

without scholarship, and university fee.

Candidates may also be admitted, at any time, under the supernumerary category if:

- they hold a grant or a similar form of funding which is part of a project promoted by

the European Union and/or other European or international organizations;

- they are non-EU citizens who do not reside in Italy and hold a grant or have some

form of economic support from their country of origin.

Supernumerary PhD candidates may be required to pay an annual departmental fee

(bench fee), which depends on the type of research work and will be determined by the

DAFE. For further information on the admission of supernumerary students, the

candidates should look at http://dottorato.unipi.it/index.php/en/ and/or contact the

Coordinator ([email protected]).

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Living in Pisa

The cost of living in Pisa is approximately € 600-700 per month; for instance, the rental for

student accommodation ranges between € 300 and € 400 per month.

Free registration to the Italian National Health Service (SSN) guarantees medical care for

all Italian students. Health care assistance is also available to all European citizens

(belonging to EU Member States and EEA States) who have the EHIC/TEAM card

(European Health Insurance Card) or who enrol in the SSN. For non-EU foreign citizens

(who belong to countries which are outside the European Union and of the European

Economic Area), the insurance coverage for health services or hospitalization is required

to obtain an entry visa in Italy and then later the residence permit.

Further information can be found in the International Student's Guide (https://www.unipi.it/index.php/erasmus-programme/item/download/12096_a29ded56d63481040f6be5ce001f1c09)

Contacts

Secretariat: Dr. Stefano Fanti, DAFE, Via del Borghetto 80, 56124 Pisa (Italy)

Tel. +39 050 2216 083; fax +39 050 2210 606; email: [email protected]

Coordinator: Prof. Andrea Cavallini, DAFE, Via del Borghetto 80, 56124 Pisa (Italy)

email: [email protected].

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