sssc retreat.bioinfo resources.20110411
DESCRIPTION
Ten minute talk to the Staff Scientist and Staff Clinicians from NCI regarding bioinformatics resources.TRANSCRIPT
Sean Davis, M.D., Ph.D.Genetics Branch, Center for Cancer Research
National Cancer InstituteNational Institutes of Health
Bioinformatics ResourcesAn Incomplete List
April 11, 2011, SS/SC Retreat
Normal Karyotype
Tumor Karyotype
The Central Dogma
phenotype
Gene Copy Number
Sequence Variation
Chromatin Structure
and Function
Gene Expression
Transcriptional Regulation
DNA Methylation
Patient and Population
Characteristics
Overview
Hardware
Software
Online databases
Training and Education
Getting Answers
Hardware
Computers Current desktops quite capable High-performance resources
Helix/Biowulf (CIT) Advanced Biomedical Computing Center (ABCC) Amazon EC2
Storage Local storage Helix/Biowulf NCI group drives
Software
Commercial
Open Source
Software
Software
Bioconductor
Bio-[Python, Java, Ruby, Perl]
BRB ArrayTools
GenePattern
And the list goes on….
Software
Online Databases
Online Databases
Training and Education
CIT/Helix training http://training.cit.nih.gov
NIH Library http://nihlibrary.nih.gov/ResearchTools/Pages/
Bioinformatics.aspx
Cold Spring Harbor, AACR, OpenHelix, BioConductor, ….
Getting Answers
http://seqanswers.com/
http://biostar.stackexchange.com/
http://bioinformatics.nci.nih.gov/
CCR Bioinformatics Core http://ccrifx.cancer.gov/
Contact and Acknowledgements