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X-ray Crystallography II

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Page 1: X-ray Crystallography II - Rutgers University · X-ray Crystallography II. Scattering by X-rays ... their first experiment on X-ray diffraction by a crystal, little was known about

X-ray Crystallography II

Page 2: X-ray Crystallography II - Rutgers University · X-ray Crystallography II. Scattering by X-rays ... their first experiment on X-ray diffraction by a crystal, little was known about

Scattering by X-rays• Two types of scattering

• Elastic - incident and scattered radiation is the same wavelength

• Inelastic - incident and scattered radiation is not the same wavelength

• Fluorescence occurs

• Intensity of scattered radiation is

Isca=(CIo)/r2 Where Isca is scattered Intensity

Io is incident intensity

r distance from scattering point to detector

C proportionality factor

Page 3: X-ray Crystallography II - Rutgers University · X-ray Crystallography II. Scattering by X-rays ... their first experiment on X-ray diffraction by a crystal, little was known about

Scattering by Two Electrons

Page 4: X-ray Crystallography II - Rutgers University · X-ray Crystallography II. Scattering by X-rays ... their first experiment on X-ray diffraction by a crystal, little was known about

Summing of Waves

Page 5: X-ray Crystallography II - Rutgers University · X-ray Crystallography II. Scattering by X-rays ... their first experiment on X-ray diffraction by a crystal, little was known about

Path Differences

Page 6: X-ray Crystallography II - Rutgers University · X-ray Crystallography II. Scattering by X-rays ... their first experiment on X-ray diffraction by a crystal, little was known about

Bragg’s Law

Page 7: X-ray Crystallography II - Rutgers University · X-ray Crystallography II. Scattering by X-rays ... their first experiment on X-ray diffraction by a crystal, little was known about

Experimental Setup

Page 8: X-ray Crystallography II - Rutgers University · X-ray Crystallography II. Scattering by X-rays ... their first experiment on X-ray diffraction by a crystal, little was known about

“Home” Source - Rotating Anode

Page 9: X-ray Crystallography II - Rutgers University · X-ray Crystallography II. Scattering by X-rays ... their first experiment on X-ray diffraction by a crystal, little was known about
Page 10: X-ray Crystallography II - Rutgers University · X-ray Crystallography II. Scattering by X-rays ... their first experiment on X-ray diffraction by a crystal, little was known about
Page 11: X-ray Crystallography II - Rutgers University · X-ray Crystallography II. Scattering by X-rays ... their first experiment on X-ray diffraction by a crystal, little was known about

National Synchrotron Light Source

Page 12: X-ray Crystallography II - Rutgers University · X-ray Crystallography II. Scattering by X-rays ... their first experiment on X-ray diffraction by a crystal, little was known about

Experimental Floor at NSLS

Page 13: X-ray Crystallography II - Rutgers University · X-ray Crystallography II. Scattering by X-rays ... their first experiment on X-ray diffraction by a crystal, little was known about

X29 Beamline NSLS

Page 14: X-ray Crystallography II - Rutgers University · X-ray Crystallography II. Scattering by X-rays ... their first experiment on X-ray diffraction by a crystal, little was known about
Page 15: X-ray Crystallography II - Rutgers University · X-ray Crystallography II. Scattering by X-rays ... their first experiment on X-ray diffraction by a crystal, little was known about

Diffraction Pattern

•The scattering intensity is a function of angle from the incident beam. Brighter reflections have a lower angel of scatter•The position of the reflection is dependent on orientation of the lattice to the incident beam

Page 16: X-ray Crystallography II - Rutgers University · X-ray Crystallography II. Scattering by X-rays ... their first experiment on X-ray diffraction by a crystal, little was known about

Diffraction One-Dimensional Lattice

• Only get constructive reinforcement if a(cosα-cosαo)=hλ

Page 17: X-ray Crystallography II - Rutgers University · X-ray Crystallography II. Scattering by X-rays ... their first experiment on X-ray diffraction by a crystal, little was known about

Diffraction Three-Dimensional Lattice

• Only get constructive reinforcement if a(cosα-cosαo)=hλb(cosα-cosαo)=kλc(cosα-cosαo)=lλ

von Laue’s equationshkl are called Miller indices

Each reflection is given a unique set of Miller indicesReciprical Lattice

Page 18: X-ray Crystallography II - Rutgers University · X-ray Crystallography II. Scattering by X-rays ... their first experiment on X-ray diffraction by a crystal, little was known about

Monochromatic vs Polychromatic X-rays

Monochromatic

Polychromatic

Page 19: X-ray Crystallography II - Rutgers University · X-ray Crystallography II. Scattering by X-rays ... their first experiment on X-ray diffraction by a crystal, little was known about

Scattering Factors

•Scattering factor (fo) ratio of the amplitude scattered by an atom to the amplitude scattered by a point electron