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1 Paolo Ghigna, Dipartimento di Chimica Fisica “M. Rolla”, Università di Pavia XAFS: X-ray Absorption Fine- Structure

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Page 1: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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Paolo Ghigna, Dipartimento di Chimica Fisica “M. Rolla”, Università di Pavia

XAFS: X-rayAbsorption Fine-Structure

Page 2: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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Summary

Basic Principles:X-ray absorption and fluorescenceSimple theoretical description

Experiment Design:Transmission v. Fluorescence modesFluorescence detectors

Data Analysis:EXAFS Analysis: near neighbor R, N, and atomic speciesXANES Analysis: formal valence and coordination chemistry

Page 3: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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What is XAFS?X-ray Absorption Fine-Structure (XAFS) is the modulation of the x-ray absorption coefficient at energies near and above an x-ray absorption edge. XAFS is also referred to as X-ray AbsorptionSpectroscopy (XAS) and is broken into 2 regimes:

XANES X-ray Absorption Near-EdgeSpectroscopyEXAFS Extended X-ray Absorption Fine-Structure which contain related, but slightlydifferent information about an element’s localcoordination and chemical state.

Fe K-edge XAFS for FeO:XAFS Characteristics:• local atomic coordination• chemical / oxidation state• applies to any element• works at low concentrations• minimal sample requirements

Page 4: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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X-ray AbsorptionX-rays (light with wavelength 0.03<λ<12 Å or energy 1<E <500 keV) are absorbed by allmatter through the photo-electric effectAn x-ray is absorbed by an atom, promoting a core-level electron (K, L, or M shell) out of the atom and into the continuum. The atom is leftin an excited state with an empty electroniclevel (a core hole). The electron ejected fromthe atom is called the photo-electron.

Page 5: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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X-ray FluorescenceWhen x-rays are absorbed by the photo-electriceffect, the excited core-hole will relax back to a “ground state” of the atom. A higher level core electron drops into the core hole, and a fluorescentx-ray or Auger electron is emitted.X-ray Fluorescence: An x-ray with energy = the difference of the corelevels is emitted.Auger Effect: An electron is promoted into the continuum from another corelevel.

Page 6: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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The X-ray Absorption Coefficient: µ

The intensity of an x-ray beam as itpasses through a material of thickness t is given by the absorptioncoefficient µ:

where I0 is the x-ray intensity hittingthe material, and I is the intensitytransmitted through the material.

Page 7: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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X-ray Absorption Measurements

Page 8: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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X-ray Absorption Fine Structure

Page 9: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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EXAFS: χ(k)

Page 10: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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The EXAFS Equation

Page 11: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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XAFS Theory: X-ray Absorption by a FreeAtom

Page 12: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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X-ray Absorption with Photo-Electron Scattering

Page 13: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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The EXAFS Equation: simple description

Page 14: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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Development of the EXAFS Equation

Page 15: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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The Photo-Electron Mean-Free Path

Page 16: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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Scattering Amplitude and Phase-Shift

Page 17: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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The EXAFS Equation

Page 18: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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X-ray Absorption Measurements: Experimental Design

Important points to consider for measuring XAFS are:Monochromatic x-rays: Need x-rays with a small energyspread or bandwidth: ∆E<1 eV at 10keV.Linear Detectors: The XAFS (k) is small, so we need a lotofphotons (ie, a synchrotron) and detectors that are very linearin x-ray intensity (ion chambers).Well-aligned Beam: The x-ray beam hitting the detectors hasto be the same hitting the sample.Homogeneous sample: For transmission measurements, weneed a sample that is of uniform and appropriate samplethickness of nearly 2 absorptionlengths. It should be freefrom pinholes. If a powder, the grains should be very fine-grained (absorption length) and uniform.

Page 19: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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X-ray Absorption Measurements: The Experiment

Energy Scanning The beamline needs to deliver monochromatic x-rays thatare tunable so we can scan energy across the absorption edge. We’ll scanfrom 200 eV below to 800 eV above the Fe K-edge, like this:

Region Starting Energy (eV) Ending Energy (eV) Step Size (eV)Pre-edge -200 -20 5.0XANES -20 +30 0.5EXAFS +30 800 0.05 Å-1

Notes: all values relative to a nominal value of the edge energy. In the EXAFS region, it’s common to step in k rather than energy. Counting Statistics: The EXAFS is a fairly small signal, so for good data µ(E) should have a noiselevel of about 10−3. That means we need to collect at least 106 photons.Transmission : Fluxes at synchrotrons are > 108 photons/sec. Count rate isnot much of an issue.Fluorescence : May be a concern, especially when concentrationsare verylow.

Page 20: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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X-ray Absorption Measurements: Transmission

Page 21: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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X-ray Absorption Measurements: Fluorescence

Page 22: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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Fluorescence Measurements: Solid-StateDetectors

Page 23: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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Data Reduction: Strategy

Page 24: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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Data Reduction: Pre-Edge Subtraction, Normalization

Page 25: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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Data Reduction: Normalized XANES and E0

Page 26: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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Data Reduction: Post-Edge Background Subtraction

Page 27: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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Data Reduction: χ(k), k-weighting

Page 28: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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Fourier Transform: χ(R)

Page 29: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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EXAFS Analysis: two shell model of FeO

Page 30: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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XANES: X-ray Absorption NearEdge Structure

At photoelectron kinetic energies withwavelengths near the first interatomicdistance:• Discrete transitions to unpopulated states• XANES is a probe of the density of emptyelectron states projected onto the phtoabsorberAt higher XANES energies:• The multiple scattering phenomenondominates• XANES is a probe for high order correlationfunctions

Page 31: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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XANES: fingerprintingDespite large advances in the past years, predictive XANES calculations are not satisfactory. Interpretation is still qualitative by comparison to known,

reference spectra (“fingerprint”) or theoretically calculated spectra (e.g., multiple scattering or band structure calculations).

XANES features and their intensity and energy position are dependent on a number of factors including

•absorbing atom valence•coordination geometry•orbital occupancy•electronegativityof coordinating atoms•interatomicdistances•orientation (for anisotropic samples)

Page 32: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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Multiple scattering (MS) in the XAFS regime

In addition to SS in EXAFS, oscillations from MS of the photoelectron can be observed in EXAFS - mostly at low k•MS is most likely along atoms with a collinear arrangement (“lensing” or “focussing” effect)•MS peaks are never found in the FT spectrum at distances shorter than the secondcoordination shellA simple assumption is that the rel. mean square displacement is additive - paths longer thantriple scattering paths are rare

Page 33: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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XANES Analysis: Oxidation State

Page 34: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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XANES: orbital occupancy

Page 35: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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XANES Analysis: Oxidation State and Coordination Chemistry

Page 36: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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Polarized XAFS -U LIII and LI edge XANES features of oriented samples

The linear uranyl (O=U=O2+) cation exhibitsstriking variations in its XAFS spectra as a function of orientation relative to the incidentradiation’s polarization vector.

Changes in U LIII XANES edge features: white line (2p→6d (6s) transition), 10eV feature (scattering on Oax), and 35eV feature(scattering on Leq)U LI XANES polarization dependency is more dramatic, due to the higher orientation of p-like final states.

Page 37: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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Polarized XAFS -- U LIII and LIedge XANES of orientedUO2(CH3CO2)2*2H2O

Page 38: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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Polarized XAFS -- U LIII and LIedge XANES of orientedUO2(CH3CO2)2*2H2O

Page 39: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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XANES Interpretation

Page 40: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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XMCD: X-Ray Magnetic Circular Dichroism

DOS

E

k

EF

DOS

E

EF-1/2

1/2

DOS

E

EF

ml=1, 2

ml= -1, -2

Page 41: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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XMCD: X-Ray Magnetic Circular Dichroism

DOS

E

k

EF

L l+s3 L l-s2

E

I L( )3

I L( )2

E

m

Page 42: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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XMCD: X-Ray Magnetic Circular Dichroism

I L( )3

I L( )2

E

Dic

rois

mo

DOS

E

EF-1/2

1/2

L l+s3 L l-s2

EE

DestraSinistra

DOS

E

EF-1/2

1/2

L l+s3

L l-s2

EE

Destra Sinistra

Page 43: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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XMCD: X-Ray Magnetic Circular Dichroism

DOS

E

EF

ml=1, 2

ml= -1, -2

I L( )3

I L( )2

E

Dic

rois

mo

l=1

l=2

EE

DestraSinistra

Page 44: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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Regole di sommazione

Lo spin s viene eliminato se si sommano gli integrali del segnale dicroico sulle soglie LIII (l+s) ed LII (l-s): l » I(LIII)+I(LII)Per eliminare il momento angolare l occorre tenere conto della degenerazione: s = I(LIII)-2I(LII)

Page 45: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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Esempio: Mn12AcSecondo la teoria dei gruppi, il momento angolare orbitale è nullo (si dice che è quenchiato dal campo cristallino)

O

Mn(IV)

Mn(III)

Page 46: XAFS: X-ray Absorption Fine- Structure · 2 Summary Basic Principles: X-ray absorption and fluorescence Simple theoretical description Experiment Design: Transmission v.Fluorescence

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Esempio: Mn12Ac

0

5

10

15

Photon Energy (eV)635 640 645 650 655 660 665 670

-10

-5

0

5

-10

-5

0

50

5

10

15

Abs

. Coe

ff. (

ar. u

n.)

XM

CD

. (ar

. un.

)

Inte

grat

ed X

MC

D. (

ar. u

n.)