a fully-integrated microfluidic chip for rna-virus detection

1
Fully-integrated microfluidic chips capable of performing DNA amplification from RNA virus, sample transportation, capillary electrophoresis separation, and on-line optical detection have been developed. The developed system consumes less reagent and sample volumes, and provides higher heating/cooling rates with a more precise temperature control. The proposed microfluidic chip is a powerful tool for the detection of DNA/RNA samples and has significant potential for implementation in micro total analysis systems. A Fully-Integrated Microfluidic Chip for RNA- Virus Detection Fu-Chun Huang 1 , Chia-Sheng Liao 2 , Gwo-Bin Lee 1,2 1 Department of Engineering Science, 2 Institute of Micro-Electro-Mechanical-System Engineering National Cheng Kung University, Tainan, Taiwan 701 Design and fabrication The study reports a new fully- integrated microfluidic device capable of performing Reverse-Transcription Polymerase Chain Reaction (RT-PCR), transportation of amplified molecular samples, capillary electrophoresis (CE) separation and on-line detection of RNA-based virus. Using three major technologies, including molecular biology, micro-fabrication and micro- fluidics, we develop an innovative micro- total-analysis-system (μ-TAS) for rapid clinical diagnosis. We have successfully demonstrated the detection of the Dengue-2 virus using the hand-held system in a shorter period with less consumption of samples and reagents. The system can perform high heating (20℃/sec) and cooling (10℃/sec) rates. The integrated system has successfully carried out the detection of Dengue-2 virus samples. Abstract Schematic representation of the fully-integrated microfluidic chips for RNA virus detection. (a) Lithography (b) Platinum deposition (c) Gold deposition (d) Insulation layer setup (e) SU-8 mold formation (f) PDMS replication (g) O 2 plasma bonding Simplified fabrication process for the fully- integrated microfluidic chip. RT/PCR reaction chamber PCR reagents RT-PCR reagents Capillary electrophor esis Optical fiber channel Leads of heaters and sensors Peristaltic micro- pneumatic pump RNA RT/PCR reacti on chambe r sample preparati on capillary electrophor esis chip photomultip lier tube compute r optical fiber after RT- PCR RT-PCR reagen ts PCR reagen ts Photograph of the fully-integrated microfluidic chip after assembly. Experimental 20 30 40 50 60 70 80 90 100 T em p eratu re ( o C ) 0 100 200 300 400 500 600 T im e (sec) (3 ) (4 ) (1 ) (2 ) (A) (B) (A)Typical PCR thermal cycles generated by the PCR chip. (B)SEM images. (1) A SU-8 mold of two optical fibers and one microchannel, (2) PDMS replication from the SU-8 mold. (3) SU-8 mold of a pneumatic pump, and (4) PDMS replication of the micro-pump. Electrophoregrams of amplified RNA product of Dengue II virus and Hae III digested x-174 DNA markers. Hg lamp High Voltage Power Supply Optical fiber Computer PMT Focus lens Band-pass filter Temperature control module Transmission line Microfluidic chip Microfluidic control module (A) (B) (A)Schematic representation of the experimental setup for CE detection. Note that excitation and emitted lights are transmitted by buried optic fibers. (B)The PCR and microfluidic control systems. Conclusions 2 .5 3 3 .5 4 4 .5 5 0 1 0 2 0 3 0 4 0 5 0 6 0 7 0 511 72 118 194 234 271 281 310 603 872 1078 1353 Time (min) Fluorescent signal (mV) MEMS design and Micro-fabrication L MML 2006

Upload: mufutau-bell

Post on 30-Dec-2015

31 views

Category:

Documents


2 download

DESCRIPTION

A Fully-Integrated Microfluidic Chip for RNA-Virus Detection. (1). (2). (3). (4). RT-PCR reagents. PCR reagents. after RT-PCR. Computer. Microfluidic chip. High Voltage Power Supply. RT/PCR reaction chamber. capillary electrophoresis chip. sample preparation. PMT. RNA. - PowerPoint PPT Presentation

TRANSCRIPT

Page 1: A Fully-Integrated Microfluidic Chip for RNA-Virus Detection

Fully-integrated microfluidic chips capable of performing DNA amplification from RNA virus, sample transportation, capillary electrophoresis separation, and on-line optical detection have been developed. The developed system consumes less reagent and sample volumes, and provides higher heating/cooling rates with a more precise temperature control.The proposed microfluidic chip is a powerful tool for the detection of DNA/RNA samples and has significant potential for implementation in micro total analysis systems.

A Fully-Integrated Microfluidic Chip for RNA-Virus DetectionFu-Chun Huang1, Chia-Sheng Liao2, Gwo-Bin Lee1,2

1Department of Engineering Science, 2Institute of Micro-Electro-Mechanical-System EngineeringNational Cheng Kung University, Tainan, Taiwan 701

Design and fabrication

The study reports a new fully-integrated microfluidic device capable of performing Reverse-Transcription Polymerase Chain Reaction (RT-PCR), transportation of amplified molecular samples, capillary electrophoresis (CE) separation and on-line detection of RNA-based virus. Using three major technologies, including molecular biology, micro-fabrication and micro-fluidics, we develop an innovative micro-total-analysis-system (μ-TAS) for rapid clinical diagnosis. We have successfully demonstrated the detection of the Dengue-2 virus using the hand-held system in a shorter period with less consumption of samples and reagents. The system can perform high heating (20 /sec) and cooling ℃(10 /sec) rates. The integrated system has successfully carried ℃out the detection of Dengue-2 virus samples.

Abstract

Schematic representation of the fully-integrated microfluidic chips for RNA virus detection.

(a) Lithography

(b) Platinum deposition

(c) Gold deposition

(d) Insulation layer setup

(e) SU-8 mold formation

(f) PDMS replication

(g) O2 plasma bonding

Simplified fabrication process for the fully- integrated microfluidic chip.

RT/PCR reaction chamber

PCR reagents

RT-PCR reagents

Capillary electrophoresis

Optical fiber channel

Leads of heaters and sensors

Peristaltic micro-pneumatic pump

RNA RT/PCR reaction chamber

sample preparation

capillary electrophoresis

chip

photomultiplier tube

computer

optical fiber

after RT-PCR

RT-PCR reagents

PCR reagents

Photograph of the fully-integrated microfluidic chip after assembly.

Experimental

2 0

3 0

4 0

5 0

6 0

7 0

8 0

9 0

1 0 0

Tem

pera

ture

(o C

)

0 1 0 0 2 0 0 3 0 0 4 0 0 5 0 0 6 0 0T im e (se c )

(3) (4)

(1) (2)

(A) (B)(A) Typical PCR thermal cycles generated by the PCR chip.(B) SEM images. (1) A SU-8 mold of two optical fibers and one

microchannel, (2) PDMS replication from the SU-8 mold. (3) SU-8 mold of a pneumatic pump, and (4) PDMS replication of the micro-pump.

Electrophoregrams of amplified RNA product of Dengue II virus and Hae III digested x-174 DNA markers.

Hg lamp

High Voltage Power Supply

Optical fiber

Computer

PMT

Focus lensBand-pass filter

Temperature control module

Transmission line

Microfluidic chip

Microfluidic control module

(A) (B)(A) Schematic representation of the experimental setup for CE detection.

Note that excitation and emitted lights are transmitted by buried optic fibers.

(B) The PCR and microfluidic control systems.

Conclusions

2 . 5 3 3 . 5 4 4 . 5 5

0

1 0

2 0

3 0

4 0

5 0

6 0

7 0

511

72118

194 234

271281

310 603

8721078 1353

Time (min)

Flu

ores

cent

sig

nal

(mV

)

MEMS design and Micro-fabrication LabMML2006